Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ONB entry

There are 6 chains in PDB entry 8ONB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 666	ALA 781
B	GLY 655	ALA 781
C	SER 666	ALA 781
D	GLY 655	ALA 781
E	SER 666	ALA 781
F	ARG 656	ALA 781

There are no helices in PDB entry 8ONB

There are 6 sheets in PDB entry 8ONB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	672	first strand
Strand 2	B	675	681	parallel
Strand 3	C	685	691	parallel
Strand 4	A	698	704	parallel
Strand 5	A	707	714	anti-parallel
Strand 6	A	728	733	anti-parallel
Strand 7	A	739	746	anti-parallel
Strand 8	A	753	755	anti-parallel
Strand 9	A	764	766	parallel
Strand 10	B	770	772	parallel
Strand 11	C	779	780	parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	A	770	772	parallel
Strand 3	C	764	766	parallel
Strand 4	C	753	755	parallel
Strand 5	C	739	746	anti-parallel
Strand 6	C	728	733	anti-parallel
Strand 7	C	707	714	anti-parallel
Strand 8	C	698	704	anti-parallel
Strand 9	B	685	691	parallel
Strand 10	A	675	681	parallel
Strand 11	C	668	672	parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	780	first strand
Strand 2	C	770	772	parallel
Strand 3	B	764	766	parallel
Strand 4	B	753	755	parallel
Strand 5	B	739	746	anti-parallel
Strand 6	B	728	733	anti-parallel
Strand 7	B	707	714	anti-parallel
Strand 8	B	697	704	anti-parallel
Strand 9	A	684	691	parallel
Strand 10	C	676	681	parallel
Strand 11	B	668	672	parallel
Strand 12	B	657	659	parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	657	659	first strand
Strand 2	D	668	672	parallel
Strand 3	E	675	681	parallel
Strand 4	F	685	691	parallel
Strand 5	D	698	704	parallel
Strand 6	D	707	714	anti-parallel
Strand 7	D	728	733	anti-parallel
Strand 8	D	739	746	anti-parallel
Strand 9	D	753	755	anti-parallel
Strand 10	D	764	766	parallel
Strand 11	E	770	772	parallel
Strand 12	F	779	780	parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	779	780	first strand
Strand 2	D	770	772	parallel
Strand 3	F	764	766	parallel
Strand 4	F	753	755	parallel
Strand 5	F	739	746	anti-parallel
Strand 6	F	728	733	anti-parallel
Strand 7	F	707	714	anti-parallel
Strand 8	F	698	704	anti-parallel
Strand 9	E	685	691	parallel
Strand 10	D	675	681	parallel
Strand 11	F	668	672	parallel
Strand 12	F	657	659	parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	779	780	first strand
Strand 2	F	770	772	parallel
Strand 3	E	764	766	parallel
Strand 4	E	753	755	parallel
Strand 5	E	739	746	anti-parallel
Strand 6	E	728	733	anti-parallel
Strand 7	E	707	714	anti-parallel
Strand 8	E	698	704	anti-parallel
Strand 9	D	685	691	parallel
Strand 10	F	675	681	parallel
Strand 11	E	668	672	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ONB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONB