Analysis of interatomic Contacts of Structural Units in PDB entry:
8OND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OND entry

There are 2 chains in PDB entry 8OND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 681LYS 1031
B
 GLY 683LYS 1031
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 8OND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
937 941Right-handed 310
Helix 2
AA2
B
937 943Right-handed 310
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There are 14 sheets in PDB entry 8OND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 727first strand
Strand 2
A
732 738anti-parallel
Strand 3
A
753 757anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
777 779first strand
Strand 2
A
791 793anti-parallel
Strand 3
A
799 801anti-parallel
Strand 4
A
810 812parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 828first strand
Strand 2
A
837 843anti-parallel
Strand 3
A
846 852anti-parallel
Strand 4
A
860 865anti-parallel
Strand 5
A
871 873anti-parallel
Strand 6
A
882 884parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 896first strand
Strand 2
A
903 904anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
914 923first strand
Strand 2
A
1021 1031anti-parallel
Strand 3
A
945 954anti-parallel
Strand 4
A
992 1001anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
932 935first strand
Strand 2
A
1007 1011anti-parallel
Strand 3
A
963 971anti-parallel
Strand 4
A
974 982anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
956 957first strand
Strand 2
A
985 986parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
685 686first strand
Strand 2
B
696 697parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
721 727first strand
Strand 2
B
732 738anti-parallel
Strand 3
B
753 757anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
777 779first strand
Strand 2
B
791 793anti-parallel
Strand 3
B
799 801anti-parallel
Strand 4
B
810 812parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
825 828first strand
Strand 2
B
837 843anti-parallel
Strand 3
B
846 852anti-parallel
Strand 4
B
860 865anti-parallel
Strand 5
B
871 873anti-parallel
Strand 6
B
882 884parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
914 923first strand
Strand 2
B
1021 1031anti-parallel
Strand 3
B
945 954anti-parallel
Strand 4
B
992 1001anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
932 935first strand
Strand 2
B
1007 1011anti-parallel
Strand 3
B
963 971anti-parallel
Strand 4
B
974 982anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
956 957first strand
Strand 2
B
985 986parallel
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