Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ONF entry

There are 3 chains in PDB entry 8ONF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 850	ASP 1107
B	ASN 850	ASP 1107
C	ASP 852	ASP 1107

There are 9 helices in PDB entry 8ONF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1040	1045	Right-handed alpha
Helix 2	AA2	A	1083	1088	Right-handed alpha
Helix 3	AA3	A	1095	1097	Right-handed 310
Helix 4	AA4	B	1040	1045	Right-handed alpha
Helix 5	AA5	B	1083	1088	Right-handed alpha
Helix 6	AA6	B	1095	1097	Right-handed 310
Helix 7	AA7	C	1040	1045	Right-handed alpha
Helix 8	AA8	C	1083	1090	Right-handed 310
Helix 9	AA9	C	1095	1097	Right-handed 310

There are 10 sheets in PDB entry 8ONF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	859	first strand
Strand 2	B	866	872	parallel
Strand 3	C	887	896	parallel
Strand 4	C	901	911	anti-parallel
Strand 5	C	921	927	anti-parallel
Strand 6	C	931	936	anti-parallel
Strand 7	C	942	944	anti-parallel
Strand 8	C	953	955	parallel
Strand 9	A	959	966	parallel
Strand 10	C	959	961	parallel
Strand 11	B	953	955	parallel
Strand 12	B	942	944	parallel
Strand 13	B	931	936	anti-parallel
Strand 14	B	921	927	anti-parallel
Strand 15	B	901	911	anti-parallel
Strand 16	B	887	896	anti-parallel
Strand 17	A	866	875	parallel
Strand 18	B	965	968	first strand

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	880	first strand
Strand 2	A	866	875	anti-parallel
Strand 3	B	887	896	parallel
Strand 4	B	901	911	anti-parallel
Strand 5	B	921	927	anti-parallel
Strand 6	B	931	936	anti-parallel
Strand 7	B	942	944	anti-parallel
Strand 8	B	953	955	parallel
Strand 9	C	959	961	parallel
Strand 10	A	959	966	parallel
Strand 11	C	854	859	first strand

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	854	858	first strand
Strand 2	C	865	871	parallel
Strand 3	A	887	896	parallel
Strand 4	A	901	911	anti-parallel
Strand 5	A	921	927	anti-parallel
Strand 6	A	931	936	anti-parallel
Strand 7	A	942	944	anti-parallel
Strand 8	A	953	955	parallel
Strand 9	B	959	961	parallel
Strand 10	C	965	966	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	994	first strand
Strand 2	A	971	982	anti-parallel
Strand 3	A	1099	1105	anti-parallel
Strand 4	A	1013	1022	anti-parallel
Strand 5	A	1062	1071	anti-parallel
Strand 6	A	1050	1053	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	998	999	first strand
Strand 2	A	1007	1009	anti-parallel
Strand 3	A	1076	1080	anti-parallel
Strand 4	A	1033	1036	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	985	994	first strand
Strand 2	B	971	982	anti-parallel
Strand 3	B	1099	1105	anti-parallel
Strand 4	B	1013	1022	anti-parallel
Strand 5	B	1062	1071	anti-parallel
Strand 6	B	1050	1053	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	998	999	first strand
Strand 2	B	1007	1009	anti-parallel
Strand 3	B	1076	1080	anti-parallel
Strand 4	B	1033	1036	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	873	874	first strand
Strand 2	C	879	880	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	985	994	first strand
Strand 2	C	971	982	anti-parallel
Strand 3	C	1099	1105	anti-parallel
Strand 4	C	1013	1022	anti-parallel
Strand 5	C	1062	1071	anti-parallel
Strand 6	C	1050	1053	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1007	1009	anti-parallel
Strand 3	C	1076	1080	anti-parallel
Strand 4	C	1033	1036	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ONF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONF