Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ONK entry

There are 12 chains in PDB entry 8ONK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	ASP 221
L	GLN 1	ASN 211
I	GLY 1	ASN 21
B	PHE 1	PRO 28
C	GLU 1	ASP 221
E	GLN 1	ASN 211
D	GLY 1	ASN 21
A	PHE 1	PRO 28
F	GLN 1	CYS 215
G	GLN 1	ARG 213
J	GLN 1	GLU 214
K	GLN 1	ARG 213

There are 29 helices in PDB entry 8ONK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	87	91	Right-handed 310
Helix 2	AA2	H	163	165	Right-handed 310
Helix 3	AA3	L	78	82	Right-handed 310
Helix 4	AA4	L	120	125	Right-handed alpha
Helix 5	AA5	L	182	187	Right-handed alpha
Helix 6	AA6	I	12	18	Right-handed alpha
Helix 7	AA7	B	8	19	Right-handed alpha
Helix 8	AA8	B	20	23	Right-handed 310
Helix 9	AA9	C	87	91	Right-handed 310
Helix 10	AB1	C	163	165	Right-handed 310
Helix 11	AB2	E	78	82	Right-handed 310
Helix 12	AB3	E	120	125	Right-handed alpha
Helix 13	AB4	E	182	187	Right-handed alpha
Helix 14	AB5	D	12	18	Right-handed alpha
Helix 15	AB6	A	8	20	Right-handed alpha
Helix 16	AB7	A	21	23	Right-handed 310
Helix 17	AB8	F	30	34	Right-handed 310
Helix 18	AB9	F	80	84	Right-handed 310
Helix 19	AC1	F	122	127	Right-handed alpha
Helix 20	AC2	F	184	188	Right-handed alpha
Helix 21	AC3	G	61	64	Right-handed 310
Helix 22	AC4	G	83	87	Right-handed 310
Helix 23	AC5	G	156	158	Right-handed 310
Helix 24	AC6	J	80	84	Right-handed 310
Helix 25	AC7	J	122	129	Right-handed alpha
Helix 26	AC8	J	184	188	Right-handed alpha
Helix 27	AC9	K	61	64	Right-handed 310
Helix 28	AD1	K	83	87	Right-handed 310
Helix 29	AD2	K	156	158	Right-handed 310

There are 39 sheets in PDB entry 8ONK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	69	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	93	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	93	98	anti-parallel
Strand 4	H	109	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	170	172	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	131	first strand
Strand 2	H	142	152	anti-parallel
Strand 3	H	182	191	anti-parallel
Strand 4	H	176	177	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	161	first strand
Strand 2	H	201	206	anti-parallel
Strand 3	H	211	216	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	66	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	32	37	anti-parallel
Strand 5	L	44	48	anti-parallel
Strand 6	L	52	53	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	154	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	197	anti-parallel
Strand 4	L	200	209	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	69	73	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	114	118	parallel
Strand 3	C	93	98	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	46	52	anti-parallel
Strand 6	C	57	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	114	118	parallel
Strand 3	C	93	98	anti-parallel
Strand 4	C	109	110	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	142	152	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	170	172	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	131	first strand
Strand 2	C	142	152	anti-parallel
Strand 3	C	182	191	anti-parallel
Strand 4	C	176	177	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	201	206	anti-parallel
Strand 3	C	211	216	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	69	74	anti-parallel
Strand 4	E	61	66	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	101	105	parallel
Strand 3	E	84	89	anti-parallel
Strand 4	E	32	37	anti-parallel
Strand 5	E	44	48	anti-parallel
Strand 6	E	52	53	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	101	105	parallel
Strand 3	E	84	89	anti-parallel
Strand 4	E	96	97	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	117	first strand
Strand 2	E	128	138	anti-parallel
Strand 3	E	172	181	anti-parallel
Strand 4	E	158	162	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	152	154	first strand
Strand 2	E	144	149	anti-parallel
Strand 3	E	190	197	anti-parallel
Strand 4	E	200	209	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	19	29	anti-parallel
Strand 3	F	63	76	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	103	107	parallel
Strand 3	F	86	90	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	46	50	anti-parallel
Strand 6	F	54	55	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	130	140	anti-parallel
Strand 3	F	174	183	anti-parallel
Strand 4	F	160	164	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	156	first strand
Strand 2	F	146	151	anti-parallel
Strand 3	F	192	199	anti-parallel
Strand 4	F	202	211	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	93	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	135	145	anti-parallel
Strand 3	G	174	184	anti-parallel
Strand 4	G	163	165	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	124	first strand
Strand 2	G	135	145	anti-parallel
Strand 3	G	174	184	anti-parallel
Strand 4	G	169	171	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	154	first strand
Strand 2	G	194	199	anti-parallel
Strand 3	G	204	209	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	19	29	anti-parallel
Strand 3	J	63	76	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	13	first strand
Strand 2	J	103	107	parallel
Strand 3	J	86	90	anti-parallel
Strand 4	J	35	39	anti-parallel
Strand 5	J	46	50	anti-parallel
Strand 6	J	54	55	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	119	first strand
Strand 2	J	130	140	anti-parallel
Strand 3	J	174	183	anti-parallel
Strand 4	J	160	164	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	154	156	first strand
Strand 2	J	146	151	anti-parallel
Strand 3	J	192	199	anti-parallel
Strand 4	J	202	211	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	93	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	57	59	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	120	124	first strand
Strand 2	K	135	145	anti-parallel
Strand 3	K	174	184	anti-parallel
Strand 4	K	163	165	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	120	124	first strand
Strand 2	K	135	145	anti-parallel
Strand 3	K	174	184	anti-parallel
Strand 4	K	169	171	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	151	154	first strand
Strand 2	K	194	199	anti-parallel
Strand 3	K	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ONK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONK