Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ONM entry

There are 2 chains in PDB entry 8ONM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLU 275
B
 MET 1GLU 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8ONM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 28Right-handed alpha
Helix 2
AA2
A
44 59Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
119 126Right-handed alpha
Helix 5
AA5
A
146 152Right-handed alpha
Helix 6
AA6
A
166 169Right-handed 310
Helix 7
AA7
A
197 210Right-handed alpha
Helix 8
AA8
A
220 227Right-handed 310
Helix 9
AA9
A
256 270Right-handed alpha
Helix 10
AB1
A
271 274Right-handed 310
Helix 11
AB2
B
22 28Right-handed alpha
Helix 12
AB3
B
44 59Right-handed alpha
Helix 13
AB4
B
66 82Right-handed alpha
Helix 14
AB5
B
119 126Right-handed alpha
Helix 15
AB6
B
146 152Right-handed alpha
Helix 16
AB7
B
166 169Right-handed 310
Helix 17
AB8
B
197 210Right-handed alpha
Helix 18
AB9
B
220 227Right-handed 310
Helix 19
AC1
B
256 270Right-handed alpha
Helix 20
AC2
B
271 274Right-handed 310
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There are 9 sheets in PDB entry 8ONM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
3 6anti-parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
30 32anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
3 6anti-parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
85 92anti-parallel
Strand 5
A
35 38anti-parallel
Strand 6
A
41 42anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
B
17 19anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
127 132parallel
Strand 4
A
238 245parallel
Strand 5
A
229 234anti-parallel
Strand 6
A
177 182anti-parallel
Strand 7
A
185 188anti-parallel
Strand 8
A
214 216parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
127 132parallel
Strand 4
A
238 245parallel
Strand 5
A
248 249anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
3 6anti-parallel
Strand 3
B
108 114anti-parallel
Strand 4
B
85 92anti-parallel
Strand 5
B
30 32anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
3 6anti-parallel
Strand 3
B
108 114anti-parallel
Strand 4
B
85 92anti-parallel
Strand 5
B
35 38anti-parallel
Strand 6
B
41 42anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
161 164anti-parallel
Strand 3
B
127 132parallel
Strand 4
B
238 245parallel
Strand 5
B
229 234anti-parallel
Strand 6
B
177 182anti-parallel
Strand 7
B
185 188anti-parallel
Strand 8
B
214 216parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
172 173first strand
Strand 2
B
161 164anti-parallel
Strand 3
B
127 132parallel
Strand 4
B
238 245parallel
Strand 5
B
248 249anti-parallel
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