Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ONN entry

There are 5 chains in PDB entry 8ONN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	GLU 275
B	MET 1	GLU 275
C	MET 1	GLU 275
D	GLY -1	GLU 275
E	MET 1	VAL 203

There are 52 helices in PDB entry 8ONN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	28	Right-handed alpha
Helix 2	AA2	A	44	59	Right-handed alpha
Helix 3	AA3	A	66	82	Right-handed alpha
Helix 4	AA4	A	119	126	Right-handed alpha
Helix 5	AA5	A	146	152	Right-handed alpha
Helix 6	AA6	A	166	169	Right-handed 310
Helix 7	AA7	A	197	210	Right-handed alpha
Helix 8	AA8	A	220	227	Right-handed 310
Helix 9	AA9	A	256	270	Right-handed alpha
Helix 10	AB1	A	271	274	Right-handed 310
Helix 11	AB2	B	22	28	Right-handed alpha
Helix 12	AB3	B	44	59	Right-handed alpha
Helix 13	AB4	B	66	82	Right-handed alpha
Helix 14	AB5	B	119	126	Right-handed alpha
Helix 15	AB6	B	147	152	Right-handed alpha
Helix 16	AB7	B	166	169	Right-handed 310
Helix 17	AB8	B	197	210	Right-handed alpha
Helix 18	AB9	B	223	227	Right-handed 310
Helix 19	AC1	B	256	270	Right-handed alpha
Helix 20	AC2	B	271	274	Right-handed 310
Helix 21	AC3	C	22	28	Right-handed alpha
Helix 22	AC4	C	44	59	Right-handed alpha
Helix 23	AC5	C	66	82	Right-handed alpha
Helix 24	AC6	C	119	126	Right-handed alpha
Helix 25	AC7	C	146	152	Right-handed alpha
Helix 26	AC8	C	166	169	Right-handed 310
Helix 27	AC9	C	197	210	Right-handed alpha
Helix 28	AD1	C	220	227	Right-handed 310
Helix 29	AD2	C	256	270	Right-handed alpha
Helix 30	AD3	C	271	274	Right-handed 310
Helix 31	AD4	D	22	28	Right-handed alpha
Helix 32	AD5	D	44	59	Right-handed alpha
Helix 33	AD6	D	66	82	Right-handed alpha
Helix 34	AD7	D	119	126	Right-handed alpha
Helix 35	AD8	D	147	152	Right-handed alpha
Helix 36	AD9	D	166	169	Right-handed 310
Helix 37	AE1	D	197	210	Right-handed alpha
Helix 38	AE2	D	220	227	Right-handed 310
Helix 39	AE3	D	256	270	Right-handed alpha
Helix 40	AE4	D	271	274	Right-handed 310
Helix 41	AE5	E	14	16	Right-handed 310
Helix 42	AE6	E	22	28	Right-handed alpha
Helix 43	AE7	E	44	59	Right-handed alpha
Helix 44	AE8	E	66	82	Right-handed alpha
Helix 45	AE9	E	99	101	Right-handed 310
Helix 46	AF1	E	119	126	Right-handed alpha
Helix 47	AF2	E	138	147	Right-handed alpha
Helix 48	AF3	E	166	169	Right-handed 310
Helix 49	AF4	E	197	210	Right-handed alpha
Helix 50	AF5	E	220	227	Right-handed 310
Helix 51	AF6	E	256	270	Right-handed alpha
Helix 52	AF7	E	271	274	Right-handed 310

There are 23 sheets in PDB entry 8ONN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	3	6	anti-parallel
Strand 3	A	108	114	anti-parallel
Strand 4	A	85	92	anti-parallel
Strand 5	A	30	32	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	3	6	anti-parallel
Strand 3	A	108	114	anti-parallel
Strand 4	A	85	92	anti-parallel
Strand 5	A	35	38	anti-parallel
Strand 6	A	41	42	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	B	17	19	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	185	188	parallel
Strand 3	A	176	182	anti-parallel
Strand 4	A	172	173	anti-parallel
Strand 5	A	161	164	anti-parallel
Strand 6	A	127	132	parallel
Strand 7	A	238	245	parallel
Strand 8	A	248	249	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	185	188	parallel
Strand 3	A	176	182	anti-parallel
Strand 4	A	229	234	anti-parallel
Strand 5	A	238	245	anti-parallel
Strand 6	A	248	249	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	3	6	anti-parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	85	92	anti-parallel
Strand 5	B	30	32	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	3	6	anti-parallel
Strand 3	B	108	114	anti-parallel
Strand 4	B	85	92	anti-parallel
Strand 5	B	35	38	anti-parallel
Strand 6	B	41	42	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	216	first strand
Strand 2	B	185	188	parallel
Strand 3	B	176	182	anti-parallel
Strand 4	B	172	173	anti-parallel
Strand 5	B	161	164	anti-parallel
Strand 6	B	127	132	parallel
Strand 7	B	238	245	parallel
Strand 8	B	248	249	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	216	first strand
Strand 2	B	185	188	parallel
Strand 3	B	176	182	anti-parallel
Strand 4	B	229	234	anti-parallel
Strand 5	B	238	245	anti-parallel
Strand 6	B	248	249	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	3	6	anti-parallel
Strand 3	C	108	114	anti-parallel
Strand 4	C	85	92	anti-parallel
Strand 5	C	30	32	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	3	6	anti-parallel
Strand 3	C	108	114	anti-parallel
Strand 4	C	85	92	anti-parallel
Strand 5	C	35	38	anti-parallel
Strand 6	C	41	42	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	19	first strand
Strand 2	D	17	19	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	216	first strand
Strand 2	C	185	188	parallel
Strand 3	C	176	182	anti-parallel
Strand 4	C	172	173	anti-parallel
Strand 5	C	161	164	anti-parallel
Strand 6	C	127	132	parallel
Strand 7	C	238	245	parallel
Strand 8	C	248	249	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	216	first strand
Strand 2	C	185	188	parallel
Strand 3	C	176	182	anti-parallel
Strand 4	C	229	234	anti-parallel
Strand 5	C	238	245	anti-parallel
Strand 6	C	248	249	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	3	6	anti-parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	85	92	anti-parallel
Strand 5	D	30	32	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	12	first strand
Strand 2	D	3	6	anti-parallel
Strand 3	D	108	114	anti-parallel
Strand 4	D	85	92	anti-parallel
Strand 5	D	35	38	anti-parallel
Strand 6	D	41	42	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	161	164	anti-parallel
Strand 3	D	127	132	parallel
Strand 4	D	238	245	parallel
Strand 5	D	229	234	anti-parallel
Strand 6	D	177	182	anti-parallel
Strand 7	D	185	188	anti-parallel
Strand 8	D	214	216	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	161	164	anti-parallel
Strand 3	D	127	132	parallel
Strand 4	D	238	245	parallel
Strand 5	D	248	249	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	3	6	anti-parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	85	92	anti-parallel
Strand 5	E	30	32	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	12	first strand
Strand 2	E	3	6	anti-parallel
Strand 3	E	108	114	anti-parallel
Strand 4	E	85	92	anti-parallel
Strand 5	E	35	38	anti-parallel
Strand 6	E	41	42	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	98	first strand
Strand 2	E	102	103	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	173	first strand
Strand 2	E	161	164	anti-parallel
Strand 3	E	127	132	parallel
Strand 4	E	238	245	parallel
Strand 5	E	229	234	anti-parallel
Strand 6	E	177	182	anti-parallel
Strand 7	E	185	188	anti-parallel
Strand 8	E	214	216	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	173	first strand
Strand 2	E	161	164	anti-parallel
Strand 3	E	127	132	parallel
Strand 4	E	238	245	parallel
Strand 5	E	248	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ONN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ONN