Analysis of interatomic Contacts of Structural Units in PDB entry:
8OO1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OO1 entry

There are 4 chains in PDB entry 8OO1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 4LEU 412
B
 GLN 1ALA 125
C
 ALA 5LEU 412
D
 SER 0ALA 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8OO1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 39Right-handed alpha
Helix 2
AA2
A
42 61Right-handed alpha
Helix 3
AA3
A
75 81Right-handed alpha
Helix 4
AA4
A
82 85Right-handed 310
Helix 5
AA5
A
86 112Right-handed alpha
Helix 6
AA6
A
114 120Right-handed alpha
Helix 7
AA7
A
121 144Right-handed alpha
Helix 8
AA8
A
155 176Right-handed alpha
Helix 9
AA9
A
184 200Right-handed alpha
Helix 10
AB1
A
204 210Right-handed alpha
Helix 11
AB2
A
224 253Right-handed alpha
Helix 12
AB3
A
262 279Right-handed alpha
Helix 13
AB4
A
288 299Right-handed alpha
Helix 14
AB5
A
302 318Right-handed alpha
Helix 15
AB6
A
319 328Right-handed alpha
Helix 16
AB7
A
330 356Right-handed alpha
Helix 17
AB8
A
362 379Right-handed alpha
Helix 18
AB9
A
391 412Right-handed alpha
Helix 19
AC1
B
87 91Right-handed 310
Helix 20
AC2
C
16 33Right-handed alpha
Helix 21
AC3
C
33 39Right-handed alpha
Helix 22
AC4
C
42 61Right-handed alpha
Helix 23
AC5
C
75 81Right-handed alpha
Helix 24
AC6
C
82 85Right-handed 310
Helix 25
AC7
C
86 105Right-handed alpha
Helix 26
AC8
C
107 112Right-handed alpha
Helix 27
AC9
C
114 120Right-handed alpha
Helix 28
AD1
C
121 145Right-handed alpha
Helix 29
AD2
C
155 176Right-handed alpha
Helix 30
AD3
C
184 200Right-handed alpha
Helix 31
AD4
C
204 210Right-handed alpha
Helix 32
AD5
C
224 253Right-handed alpha
Helix 33
AD6
C
262 279Right-handed alpha
Helix 34
AD7
C
288 299Right-handed alpha
Helix 35
AD8
C
302 318Right-handed alpha
Helix 36
AD9
C
319 328Right-handed alpha
Helix 37
AE1
C
330 356Right-handed alpha
Helix 38
AE2
C
362 379Right-handed alpha
Helix 39
AE3
C
391 412Right-handed alpha
Helix 40
AE4
D
87 91Right-handed 310
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There are 10 sheets in PDB entry 8OO1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
285 287anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
387 389anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
68 73anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
112 115anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
92 99anti-parallel
Strand 5
B
119 121anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 71first strand
Strand 2
C
285 287anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
382 384first strand
Strand 2
C
387 389anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
17 25anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
119 123parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
119 123parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
112 115anti-parallel
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