Analysis of interatomic Contacts of Structural Units in PDB entry:
8OO9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OO9 entry

There are 3 chains in PDB entry 8OO9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLN 964	SER 1706
K	G 20	G 40
L	C -40	C -20

There are 23 helices in PDB entry 8OO9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	973	989	Right-handed alpha
Helix 2	AA2	G	1002	1019	Right-handed alpha
Helix 3	AA3	G	1029	1031	Right-handed 310
Helix 4	AA4	G	1032	1044	Right-handed alpha
Helix 5	AA5	G	1055	1063	Right-handed alpha
Helix 6	AA6	G	1064	1066	Right-handed 310
Helix 7	AA7	G	1087	1092	Right-handed alpha
Helix 8	AA8	G	1092	1097	Right-handed alpha
Helix 9	AA9	G	1108	1112	Right-handed 310
Helix 10	AB1	G	1117	1125	Right-handed alpha
Helix 11	AB2	G	1142	1154	Right-handed alpha
Helix 12	AB3	G	1187	1194	Right-handed alpha
Helix 13	AB4	G	1202	1207	Right-handed alpha
Helix 14	AB5	G	1223	1235	Right-handed alpha
Helix 15	AB6	G	1236	1239	Right-handed 310
Helix 16	AB7	G	1257	1270	Right-handed alpha
Helix 17	AB8	G	1270	1275	Right-handed alpha
Helix 18	AB9	G	1544	1551	Right-handed alpha
Helix 19	AC1	G	1552	1568	Right-handed alpha
Helix 20	AC2	G	1578	1592	Right-handed alpha
Helix 21	AC3	G	1604	1618	Right-handed alpha
Helix 22	AC4	G	1651	1660	Right-handed alpha
Helix 23	AC5	G	1681	1700	Right-handed alpha

There are 3 sheets in PDB entry 8OO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1049	1052	first strand
Strand 2	G	1081	1085	parallel
Strand 3	G	1024	1028	parallel
Strand 4	G	1103	1106	parallel
Strand 5	G	1131	1134	parallel
Strand 6	G	993	995	parallel
Strand 7	G	1198	1199	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1100	1101	first strand
Strand 2	G	1127	1128	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1214	1220	first strand
Strand 2	G	1672	1678	parallel
Strand 3	G	1642	1645	parallel
Strand 4	G	1572	1576	parallel
Strand 5	G	1623	1627	parallel
Strand 6	G	1596	1599	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OO9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OO9