Analysis of interatomic Contacts of Structural Units in PDB entry:
8OOF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OOF entry

There are 2 chains in PDB entry 8OOF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	GLN 7	VAL 217
J	GLU 17	ALA 767

There are 25 helices in PDB entry 8OOF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	7	21	Right-handed alpha
Helix 2	AA2	I	43	52	Right-handed alpha
Helix 3	AA3	I	190	199	Right-handed alpha
Helix 4	AA4	I	203	211	Right-handed alpha
Helix 5	AA5	J	42	52	Right-handed alpha
Helix 6	AA6	J	128	143	Right-handed alpha
Helix 7	AA7	J	165	179	Right-handed alpha
Helix 8	AA8	J	190	198	Right-handed alpha
Helix 9	AA9	J	225	228	Right-handed 310
Helix 10	AB1	J	234	250	Right-handed alpha
Helix 11	AB2	J	259	271	Right-handed alpha
Helix 12	AB3	J	276	283	Right-handed alpha
Helix 13	AB4	J	289	294	Right-handed alpha
Helix 14	AB5	J	603	606	Right-handed 310
Helix 15	AB6	J	607	615	Right-handed alpha
Helix 16	AB7	J	634	639	Right-handed alpha
Helix 17	AB8	J	640	643	Right-handed 310
Helix 18	AB9	J	645	650	Right-handed alpha
Helix 19	AC1	J	656	667	Right-handed alpha
Helix 20	AC2	J	679	684	Right-handed alpha
Helix 21	AC3	J	690	694	Right-handed 310
Helix 22	AC4	J	697	708	Right-handed alpha
Helix 23	AC5	J	726	736	Right-handed alpha
Helix 24	AC6	J	738	743	Right-handed alpha
Helix 25	AC7	J	748	755	Right-handed alpha

There are 6 sheets in PDB entry 8OOF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	179	180	first strand
Strand 2	I	187	188	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	29	first strand
Strand 2	J	296	298	parallel
Strand 3	J	629	631	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	80	82	first strand
Strand 2	J	68	72	anti-parallel
Strand 3	J	59	63	anti-parallel
Strand 4	J	156	160	parallel
Strand 5	J	184	189	parallel
Strand 6	J	746	747	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	97	100	first strand
Strand 2	J	85	90	anti-parallel
Strand 3	J	115	117	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	222	223	first strand
Strand 2	J	213	219	anti-parallel
Strand 3	J	229	230	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	222	223	first strand
Strand 2	J	213	219	anti-parallel
Strand 3	J	203	208	anti-parallel
Strand 4	J	686	689	parallel
Strand 5	J	718	720	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OOF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OOF