Analysis of interatomic Contacts of Structural Units in PDB entry:
8OOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OOH entry

There are 2 chains in PDB entry 8OOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 26GLU 306
B
 THR 26VAL 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 8OOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 69Right-handed 310
Helix 2
AA2
A
70 78Right-handed alpha
Helix 3
AA3
A
103 118Right-handed alpha
Helix 4
AA4
A
130 142Right-handed alpha
Helix 5
AA5
A
162 173Right-handed alpha
Helix 6
AA6
A
173 185Right-handed alpha
Helix 7
AA7
A
185 190Right-handed alpha
Helix 8
AA8
A
190 195Right-handed alpha
Helix 9
AA9
A
198 202Right-handed 310
Helix 10
AB1
A
203 212Right-handed alpha
Helix 11
AB2
A
214 231Right-handed alpha
Helix 12
AB3
A
231 241Right-handed alpha
Helix 13
AB4
A
241 246Right-handed alpha
Helix 14
AB5
A
262 273Right-handed alpha
Helix 15
AB6
A
287 292Right-handed alpha
Helix 16
AB7
A
292 306Right-handed alpha
Helix 17
AB8
B
66 69Right-handed 310
Helix 18
AB9
B
70 78Right-handed alpha
Helix 19
AC1
B
103 118Right-handed alpha
Helix 20
AC2
B
130 142Right-handed alpha
Helix 21
AC3
B
162 173Right-handed alpha
Helix 22
AC4
B
173 185Right-handed alpha
Helix 23
AC5
B
185 190Right-handed alpha
Helix 24
AC6
B
190 195Right-handed alpha
Helix 25
AC7
B
198 202Right-handed 310
Helix 26
AC8
B
203 212Right-handed alpha
Helix 27
AC9
B
214 231Right-handed alpha
Helix 28
AD1
B
231 241Right-handed alpha
Helix 29
AD2
B
241 246Right-handed alpha
Helix 30
AD3
B
262 273Right-handed alpha
Helix 31
AD4
B
287 292Right-handed alpha
Helix 32
AD5
B
292 307Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8OOH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
40 47anti-parallel
Strand 3
A
82 86anti-parallel
Strand 4
A
56 60parallel
Strand 5
A
123 128parallel
Strand 6
A
146 152parallel
Strand 7
A
250 255parallel
Strand 8
A
276 281parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
40 47anti-parallel
Strand 3
B
82 86anti-parallel
Strand 4
B
56 60parallel
Strand 5
B
123 128parallel
Strand 6
B
146 152parallel
Strand 7
B
250 255parallel
Strand 8
B
276 281parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il