Analysis of interatomic Contacts of Structural Units in PDB entry:
8OOS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OOS entry

There are 9 chains in PDB entry 8OOS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLN 964	SER 1706
K	T -72	C 37
L	A -34	A 72
M	LEU 61	ARG 134
N	VAL 21	GLN 93
O	ARG 11	LYS 119
P	ARG 30	LYS 122
Q	LYS 37	ARG 134
R	ARG 23	GLY 102

There are 47 helices in PDB entry 8OOS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	965	969	Right-handed 310
Helix 2	AA2	G	973	989	Right-handed alpha
Helix 3	AA3	G	1002	1019	Right-handed alpha
Helix 4	AA4	G	1029	1031	Right-handed 310
Helix 5	AA5	G	1032	1044	Right-handed alpha
Helix 6	AA6	G	1055	1063	Right-handed alpha
Helix 7	AA7	G	1064	1066	Right-handed 310
Helix 8	AA8	G	1087	1092	Right-handed alpha
Helix 9	AA9	G	1092	1097	Right-handed alpha
Helix 10	AB1	G	1108	1113	Right-handed 310
Helix 11	AB2	G	1117	1124	Right-handed alpha
Helix 12	AB3	G	1143	1154	Right-handed alpha
Helix 13	AB4	G	1189	1193	Right-handed 310
Helix 14	AB5	G	1223	1240	Right-handed alpha
Helix 15	AB6	G	1257	1270	Right-handed alpha
Helix 16	AB7	G	1271	1274	Right-handed 310
Helix 17	AB8	G	1544	1551	Right-handed alpha
Helix 18	AB9	G	1552	1569	Right-handed alpha
Helix 19	AC1	G	1579	1591	Right-handed alpha
Helix 20	AC2	G	1604	1618	Right-handed alpha
Helix 21	AC3	G	1651	1663	Right-handed alpha
Helix 22	AC4	G	1681	1701	Right-handed alpha
Helix 23	AC5	M	63	76	Right-handed alpha
Helix 24	AC6	M	85	114	Right-handed alpha
Helix 25	AC7	M	120	131	Right-handed alpha
Helix 26	AC8	N	24	29	Right-handed 310
Helix 27	AC9	N	30	41	Right-handed alpha
Helix 28	AD1	N	49	76	Right-handed alpha
Helix 29	AD2	N	82	93	Right-handed alpha
Helix 30	AD3	O	16	22	Right-handed alpha
Helix 31	AD4	O	26	37	Right-handed alpha
Helix 32	AD5	O	46	73	Right-handed alpha
Helix 33	AD6	O	79	90	Right-handed alpha
Helix 34	AD7	O	90	97	Right-handed alpha
Helix 35	AD8	O	112	116	Right-handed 310
Helix 36	AD9	P	34	46	Right-handed alpha
Helix 37	AE1	P	52	82	Right-handed alpha
Helix 38	AE2	P	87	99	Right-handed alpha
Helix 39	AE3	P	100	119	Right-handed alpha
Helix 40	AE4	Q	44	55	Right-handed alpha
Helix 41	AE5	Q	63	77	Right-handed alpha
Helix 42	AE6	Q	85	114	Right-handed alpha
Helix 43	AE7	Q	120	131	Right-handed alpha
Helix 44	AE8	R	24	29	Right-handed 310
Helix 45	AE9	R	30	41	Right-handed alpha
Helix 46	AF1	R	49	76	Right-handed alpha
Helix 47	AF2	R	82	93	Right-handed alpha

There are 8 sheets in PDB entry 8OOS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1049	1051	first strand
Strand 2	G	1081	1085	parallel
Strand 3	G	1024	1028	parallel
Strand 4	G	1103	1106	parallel
Strand 5	G	1131	1134	parallel
Strand 6	G	993	995	parallel
Strand 7	G	1198	1199	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1214	1217	first strand
Strand 2	G	1672	1675	parallel
Strand 3	G	1642	1645	parallel
Strand 4	G	1572	1576	parallel
Strand 5	G	1623	1627	parallel
Strand 6	G	1596	1599	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	83	84	first strand
Strand 2	N	80	81	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	119	first strand
Strand 2	N	45	46	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	42	43	first strand
Strand 2	P	85	86	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	77	78	first strand
Strand 2	P	50	51	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	100	102	first strand
Strand 2	R	96	98	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	118	119	first strand
Strand 2	R	45	46	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OOS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OOS