Analysis of interatomic Contacts of Structural Units in PDB entry:
8OOY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OOY entry

There are 4 chains in PDB entry 8OOY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 325HIS 928
T
 A 11 C 36
P
 G 1 C 18
D
 C 8 T 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8OOY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
335 348Right-handed alpha
Helix 2
AA2
A
397 410Right-handed alpha
Helix 3
AA3
A
420 430Right-handed alpha
Helix 4
AA4
A
442 450Right-handed alpha
Helix 5
AA5
A
457 466Right-handed alpha
Helix 6
AA6
A
472 478Right-handed alpha
Helix 7
AA7
A
485 489Right-handed 310
Helix 8
AA8
A
490 519Right-handed alpha
Helix 9
AA9
A
519 529Right-handed alpha
Helix 10
AB1
A
532 544Right-handed alpha
Helix 11
AB2
A
548 575Right-handed alpha
Helix 12
AB3
A
582 594Right-handed alpha
Helix 13
AB4
A
610 619Right-handed alpha
Helix 14
AB5
A
621 640Right-handed alpha
Helix 15
AB6
A
642 647Right-handed alpha
Helix 16
AB7
A
675 679Right-handed 310
Helix 17
AB8
A
683 692Right-handed alpha
Helix 18
AB9
A
708 719Right-handed alpha
Helix 19
AC1
A
720 730Right-handed alpha
Helix 20
AC2
A
732 743Right-handed alpha
Helix 21
AC3
A
745 749Right-handed 310
Helix 22
AC4
A
750 767Right-handed alpha
Helix 23
AC5
A
769 778Right-handed alpha
Helix 24
AC6
A
780 795Right-handed alpha
Helix 25
AC7
A
795 812Right-handed alpha
Helix 26
AC8
A
832 871Right-handed alpha
Helix 27
AC9
A
892 906Right-handed alpha
Helix 28
AD1
A
923 928Right-handed alpha
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There are 4 sheets in PDB entry 8OOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
379 384parallel
Strand 3
A
368 376anti-parallel
Strand 4
A
357 358anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
415 418parallel
Strand 3
A
438 441parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 660first strand
Strand 2
A
670 672anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 702first strand
Strand 2
A
886 889anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il