Analysis of interatomic Contacts of Structural Units in PDB entry:
8OP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OP1 entry

There are 10 chains in PDB entry 8OP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2LYS 379
F
 C 1001 C 1007
B
 ALA 2LYS 379
G
 C 1001 C 1007
C
 ALA 2LYS 379
H
 C 1001 C 1007
D
 ALA 2LYS 379
I
 C 1001 C 1007
E
 ALA 2LYS 379
J
 C 1001 C 1007
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are110 helices in PDB entry 8OP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 20Right-handed alpha
Helix 2
AA2
A
37 39Right-handed 310
Helix 3
AA3
A
40 54Right-handed alpha
Helix 4
AA4
A
58 61Right-handed 310
Helix 5
AA5
A
62 75Right-handed alpha
Helix 6
AA6
A
75 87Right-handed alpha
Helix 7
AA7
A
121 143Right-handed alpha
Helix 8
AA8
A
146 150Right-handed 310
Helix 9
AA9
A
155 171Right-handed alpha
Helix 10
AB1
A
178 189Right-handed alpha
Helix 11
AB2
A
190 197Right-handed alpha
Helix 12
AB3
A
201 216Right-handed alpha
Helix 13
AB4
A
217 231Right-handed alpha
Helix 14
AB5
A
237 248Right-handed alpha
Helix 15
AB6
A
255 267Right-handed alpha
Helix 16
AB7
A
269 273Right-handed 310
Helix 17
AB8
A
274 279Right-handed alpha
Helix 18
AB9
A
280 295Right-handed alpha
Helix 19
AC1
A
296 300Right-handed 310
Helix 20
AC2
A
306 313Right-handed 310
Helix 21
AC3
A
317 331Right-handed alpha
Helix 22
AC4
A
343 360Right-handed alpha
Helix 23
AC5
A
374 379Right-handed alpha
Helix 24
AC6
B
2 6Right-handed 310
Helix 25
AC7
B
9 20Right-handed alpha
Helix 26
AC8
B
40 54Right-handed alpha
Helix 27
AC9
B
58 60Right-handed 310
Helix 28
AD1
B
61 75Right-handed alpha
Helix 29
AD2
B
75 86Right-handed alpha
Helix 30
AD3
B
120 143Right-handed alpha
Helix 31
AD4
B
146 150Right-handed 310
Helix 32
AD5
B
155 170Right-handed alpha
Helix 33
AD6
B
171 173Right-handed 310
Helix 34
AD7
B
178 189Right-handed alpha
Helix 35
AD8
B
190 197Right-handed alpha
Helix 36
AD9
B
201 216Right-handed alpha
Helix 37
AE1
B
216 231Right-handed alpha
Helix 38
AE2
B
237 251Right-handed alpha
Helix 39
AE3
B
255 267Right-handed alpha
Helix 40
AE4
B
269 273Right-handed 310
Helix 41
AE5
B
274 279Right-handed alpha
Helix 42
AE6
B
280 295Right-handed alpha
Helix 43
AE7
B
296 300Right-handed 310
Helix 44
AE8
B
306 313Right-handed 310
Helix 45
AE9
B
317 331Right-handed alpha
Helix 46
AF1
B
343 360Right-handed alpha
Helix 47
AF2
B
373 379Right-handed alpha
Helix 48
AF3
C
9 20Right-handed alpha
Helix 49
AF4
C
37 39Right-handed 310
Helix 50
AF5
C
40 54Right-handed alpha
Helix 51
AF6
C
58 60Right-handed 310
Helix 52
AF7
C
61 75Right-handed alpha
Helix 53
AF8
C
75 86Right-handed alpha
Helix 54
AF9
C
120 142Right-handed alpha
Helix 55
AG1
C
155 171Right-handed alpha
Helix 56
AG2
C
178 189Right-handed alpha
Helix 57
AG3
C
190 197Right-handed alpha
Helix 58
AG4
C
201 216Right-handed alpha
Helix 59
AG5
C
216 231Right-handed alpha
Helix 60
AG6
C
237 248Right-handed alpha
Helix 61
AG7
C
255 267Right-handed alpha
Helix 62
AG8
C
269 273Right-handed 310
Helix 63
AG9
C
274 295Right-handed alpha
Helix 64
AH1
C
296 298Right-handed 310
Helix 65
AH2
C
309 313Right-handed 310
Helix 66
AH3
C
317 331Right-handed alpha
Helix 67
AH4
C
343 360Right-handed alpha
Helix 68
AH5
C
373 379Right-handed alpha
Helix 69
AH6
D
10 20Right-handed alpha
Helix 70
AH7
D
40 54Right-handed alpha
Helix 71
AH8
D
58 60Right-handed 310
Helix 72
AH9
D
61 75Right-handed alpha
Helix 73
AI1
D
75 87Right-handed alpha
Helix 74
AI2
D
120 143Right-handed alpha
Helix 75
AI3
D
146 150Right-handed 310
Helix 76
AI4
D
155 170Right-handed alpha
Helix 77
AI5
D
178 189Right-handed alpha
Helix 78
AI6
D
190 197Right-handed alpha
Helix 79
AI7
D
201 216Right-handed alpha
Helix 80
AI8
D
217 231Right-handed alpha
Helix 81
AI9
D
237 248Right-handed alpha
Helix 82
AJ1
D
255 267Right-handed alpha
Helix 83
AJ2
D
269 273Right-handed 310
Helix 84
AJ3
D
274 279Right-handed alpha
Helix 85
AJ4
D
280 295Right-handed alpha
Helix 86
AJ5
D
296 300Right-handed 310
Helix 87
AJ6
D
306 313Right-handed 310
Helix 88
AJ7
D
317 331Right-handed alpha
Helix 89
AJ8
D
343 360Right-handed alpha
Helix 90
AJ9
D
372 379Right-handed alpha
Helix 91
AK1
E
10 20Right-handed alpha
Helix 92
AK2
E
40 54Right-handed alpha
Helix 93
AK3
E
61 75Right-handed alpha
Helix 94
AK4
E
76 86Right-handed alpha
Helix 95
AK5
E
120 143Right-handed alpha
Helix 96
AK6
E
146 150Right-handed 310
Helix 97
AK7
E
155 171Right-handed alpha
Helix 98
AK8
E
178 189Right-handed alpha
Helix 99
AK9
E
190 197Right-handed alpha
Helix 100
AL1
E
201 216Right-handed alpha
Helix 101
AL2
E
217 231Right-handed alpha
Helix 102
AL3
E
237 248Right-handed alpha
Helix 103
AL4
E
255 267Right-handed alpha
Helix 104
AL5
E
269 273Right-handed 310
Helix 105
AL6
E
274 279Right-handed alpha
Helix 106
AL7
E
280 295Right-handed alpha
Helix 107
AL8
E
296 299Right-handed 310
Helix 108
AL9
E
306 313Right-handed 310
Helix 109
AM1
E
317 331Right-handed alpha
Helix 110
AM2
E
343 358Right-handed alpha
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There are 13 sheets in PDB entry 8OP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
88 89parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
92 93parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 104first strand
Strand 2
A
107 114anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
88 89parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
92 93parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 104first strand
Strand 2
B
107 115anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 28first strand
Strand 2
C
88 89parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
33 35first strand
Strand 2
C
92 94parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 104first strand
Strand 2
C
107 114anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
33 34first strand
Strand 2
D
92 93parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 104first strand
Strand 2
D
107 114anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
92 93parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 104first strand
Strand 2
E
107 114anti-parallel
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