Analysis of interatomic Contacts of Structural Units in PDB entry:
8OP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OP8 entry

There are 2 chains in PDB entry 8OP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 UNK 1UNK 31
A
 PRO 3LYS 1284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8OP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 26Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
27 44Right-handed alpha
Helix 4
AA4
A
53 74Right-handed alpha
Helix 5
AA5
A
79 86Right-handed alpha
Helix 6
AA6
A
160 165Right-handed alpha
Helix 7
AA7
A
171 183Right-handed alpha
Helix 8
AA8
A
193 204Right-handed alpha
Helix 9
AA9
A
204 217Right-handed alpha
Helix 10
AB1
A
222 252Right-handed alpha
Helix 11
AB2
A
384 387Right-handed 310
Helix 12
AB3
A
388 399Right-handed alpha
Helix 13
AB4
A
408 436Right-handed alpha
Helix 14
AB5
A
439 455Right-handed alpha
Helix 15
AB6
A
458 474Right-handed alpha
Helix 16
AB7
A
475 477Right-handed 310
Helix 17
AB8
A
483 493Right-handed 310
Helix 18
AB9
A
544 552Right-handed alpha
Helix 19
AC1
A
568 579Right-handed alpha
Helix 20
AC2
A
646 653Right-handed alpha
Helix 21
AC3
A
660 671Right-handed alpha
Helix 22
AC4
A
698 703Right-handed alpha
Helix 23
AC5
A
721 731Right-handed alpha
Helix 24
AC6
A
743 754Right-handed alpha
Helix 25
AC7
A
799 804Right-handed alpha
Helix 26
AC8
A
823 827Right-handed 310
Helix 27
AC9
A
838 851Right-handed alpha
Helix 28
AD1
A
863 870Right-handed alpha
Helix 29
AD2
A
880 896Right-handed alpha
Helix 30
AD3
A
1014 1019Right-handed alpha
Helix 31
AD4
A
1029 1063Right-handed alpha
Helix 32
AD5
A
1076 1094Right-handed alpha
Helix 33
AD6
A
1112 1141Right-handed alpha
Helix 34
AD7
A
1156 1176Right-handed alpha
Helix 35
AD8
A
1186 1189Right-handed 310
Helix 36
AD9
A
1190 1210Right-handed alpha
Helix 37
AE1
A
1212 1219Right-handed alpha
Helix 38
AE2
A
1225 1254Right-handed alpha
Helix 39
AE3
A
1266 1284Right-handed alpha
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There are 9 sheets in PDB entry 8OP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
10 18anti-parallel
Strand 3
A
98 103anti-parallel
Strand 4
A
111 114anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
144 146anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 273first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
282 285anti-parallel
Strand 4
A
377 383anti-parallel
Strand 5
A
297 302anti-parallel
Strand 6
A
343 344anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 321first strand
Strand 2
A
304 308anti-parallel
Strand 3
A
349 354anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 481first strand
Strand 2
A
1021 1023anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
735 736first strand
Strand 2
A
495 498parallel
Strand 3
A
854 858parallel
Strand 4
A
872 875parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
537 538first strand
Strand 2
A
511 515anti-parallel
Strand 3
A
710 715anti-parallel
Strand 4
A
673 681anti-parallel
Strand 5
A
635 645anti-parallel
Strand 6
A
618 628anti-parallel
Strand 7
A
603 609anti-parallel
Strand 8
A
587 589anti-parallel
Strand 9
A
581 583anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
565 566anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
738 739first strand
Strand 2
A
829 833parallel
Strand 3
A
805 809parallel
Strand 4
A
761 765parallel
Strand 5
A
777 781anti-parallel
Strand 6
A
789 790anti-parallel
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