Analysis of interatomic Contacts of Structural Units in PDB entry:
8OPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OPP entry

There is 1 chain in PDB entry 8OPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 287GLU 1279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8OPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
288 305Right-handed alpha
Helix 2
AA2
A
309 327Right-handed alpha
Helix 3
AA3
A
340 345Right-handed alpha
Helix 4
AA4
A
364 379Right-handed alpha
Helix 5
AA5
A
413 430Right-handed alpha
Helix 6
AA6
A
432 447Right-handed alpha
Helix 7
AA7
A
458 473Right-handed alpha
Helix 8
AA8
A
490 494Right-handed 310
Helix 9
AA9
A
550 564Right-handed alpha
Helix 10
AB1
A
582 587Right-handed alpha
Helix 11
AB2
A
611 630Right-handed alpha
Helix 12
AB3
A
994 1013Right-handed alpha
Helix 13
AB4
A
1015 1035Right-handed alpha
Helix 14
AB5
A
1078 1090Right-handed alpha
Helix 15
AB6
A
1125 1141Right-handed alpha
Helix 16
AB7
A
1141 1159Right-handed alpha
Helix 17
AB8
A
1169 1184Right-handed alpha
Helix 18
AB9
A
1219 1224Right-handed alpha
Helix 19
AC1
A
1233 1247Right-handed alpha
Helix 20
AC2
A
1265 1269Right-handed 310
Helix 21
AC3
A
1293 1313Right-handed alpha
Helix 22
AC4
A
1324 1329Right-handed alpha
Helix 23
AC5
A
1331 1336Right-handed alpha
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There are 3 sheets in PDB entry 8OPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 338first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
406 411parallel
Strand 4
A
395 400anti-parallel
Strand 5
A
382 388anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 503first strand
Strand 2
A
506 510anti-parallel
Strand 3
A
537 538anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1041 1045first strand
Strand 2
A
1059 1064anti-parallel
Strand 3
A
1116 1122parallel
Strand 4
A
1106 1111anti-parallel
Strand 5
A
1097 1099anti-parallel
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