Analysis of interatomic Contacts of Structural Units in PDB entry:
8OPQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OPQ entry

There are 2 chains in PDB entry 8OPQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 28PRO 747
B
 ASP 28PRO 747
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8OPQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 46Right-handed alpha
Helix 2
AA2
A
63 75Right-handed alpha
Helix 3
AA3
A
76 81Right-handed alpha
Helix 4
AA4
A
85 116Right-handed alpha
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
127 137Right-handed alpha
Helix 7
AA7
A
147 162Right-handed alpha
Helix 8
AA8
A
170 201Right-handed alpha
Helix 9
AA9
A
205 210Right-handed 310
Helix 10
AB1
A
211 236Right-handed alpha
Helix 11
AB2
A
246 258Right-handed alpha
Helix 12
AB3
A
259 262Right-handed 310
Helix 13
AB4
A
263 287Right-handed alpha
Helix 14
AB5
A
296 313Right-handed alpha
Helix 15
AB6
A
337 339Right-handed 310
Helix 16
AB7
A
340 371Right-handed alpha
Helix 17
AB8
A
375 393Right-handed alpha
Helix 18
AB9
A
401 412Right-handed alpha
Helix 19
AC1
A
415 432Right-handed alpha
Helix 20
AC2
A
434 438Right-handed 310
Helix 21
AC3
A
441 452Right-handed alpha
Helix 22
AC4
A
453 470Right-handed alpha
Helix 23
AC5
A
470 487Right-handed alpha
Helix 24
AC6
A
487 509Right-handed alpha
Helix 25
AC7
A
553 565Right-handed alpha
Helix 26
AC8
A
568 594Right-handed alpha
Helix 27
AC9
A
656 661Right-handed alpha
Helix 28
AD1
A
681 698Right-handed alpha
Helix 29
AD2
A
708 718Right-handed alpha
Helix 30
AD3
A
726 728Right-handed 310
Helix 31
AD4
A
733 744Right-handed alpha
Helix 32
AD5
B
37 46Right-handed alpha
Helix 33
AD6
B
63 75Right-handed alpha
Helix 34
AD7
B
76 81Right-handed alpha
Helix 35
AD8
B
85 116Right-handed alpha
Helix 36
AD9
B
118 126Right-handed alpha
Helix 37
AE1
B
127 137Right-handed alpha
Helix 38
AE2
B
147 162Right-handed alpha
Helix 39
AE3
B
170 201Right-handed alpha
Helix 40
AE4
B
205 210Right-handed 310
Helix 41
AE5
B
211 236Right-handed alpha
Helix 42
AE6
B
246 258Right-handed alpha
Helix 43
AE7
B
259 262Right-handed 310
Helix 44
AE8
B
263 287Right-handed alpha
Helix 45
AE9
B
296 313Right-handed alpha
Helix 46
AF1
B
337 339Right-handed 310
Helix 47
AF2
B
340 371Right-handed alpha
Helix 48
AF3
B
375 393Right-handed alpha
Helix 49
AF4
B
401 412Right-handed alpha
Helix 50
AF5
B
415 432Right-handed alpha
Helix 51
AF6
B
434 438Right-handed 310
Helix 52
AF7
B
441 452Right-handed alpha
Helix 53
AF8
B
453 470Right-handed alpha
Helix 54
AF9
B
470 487Right-handed alpha
Helix 55
AG1
B
487 509Right-handed alpha
Helix 56
AG2
B
553 565Right-handed alpha
Helix 57
AG3
B
568 594Right-handed alpha
Helix 58
AG4
B
656 661Right-handed alpha
Helix 59
AG5
B
681 698Right-handed alpha
Helix 60
AG6
B
708 718Right-handed alpha
Helix 61
AG7
B
726 728Right-handed 310
Helix 62
AG8
B
733 744Right-handed alpha
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There are 4 sheets in PDB entry 8OPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
399 400anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
525 527first strand
Strand 2
A
514 518anti-parallel
Strand 3
A
540 544anti-parallel
Strand 4
A
669 673parallel
Strand 5
A
701 705parallel
Strand 6
A
730 731parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
399 400anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
525 527first strand
Strand 2
B
514 518anti-parallel
Strand 3
B
540 544anti-parallel
Strand 4
B
669 673parallel
Strand 5
B
701 705parallel
Strand 6
B
730 731parallel
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