Analysis of interatomic Contacts of Structural Units in PDB entry:
8OPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OPR entry

There are 3 chains in PDB entry 8OPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 212LEU 862
B
 GLN 1SER 120
C
 GLN 1VAL 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8OPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
234 238Right-handed 310
Helix 2
AA2
A
239 241Right-handed 310
Helix 3
AA3
A
324 331Right-handed alpha
Helix 4
AA4
A
459 461Right-handed 310
Helix 5
AA5
A
624 626Right-handed 310
Helix 6
AA6
A
740 745Right-handed alpha
Helix 7
AA7
A
842 844Right-handed 310
Helix 8
AA8
B
28 32Right-handed 310
Helix 9
AA9
B
86 90Right-handed 310
Helix 10
AB1
C
28 32Right-handed 310
Helix 11
AB2
C
87 91Right-handed 310
Helix 12
AB3
C
110 112Right-handed 310
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There are 20 sheets in PDB entry 8OPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 224first strand
Strand 2
A
227 233anti-parallel
Strand 3
A
261 265anti-parallel
Strand 4
A
252 255anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
243 245anti-parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
283 288anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 298first strand
Strand 2
A
314 316anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
384 394parallel
Strand 3
A
369 379anti-parallel
Strand 4
A
333 341anti-parallel
Strand 5
A
356 357anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
400 410anti-parallel
Strand 3
A
441 451anti-parallel
Strand 4
A
454 457anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 430first strand
Strand 2
A
400 410anti-parallel
Strand 3
A
441 451anti-parallel
Strand 4
A
479 482anti-parallel
Strand 5
A
473 476anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 437first strand
Strand 2
A
497 506parallel
Strand 3
A
486 494anti-parallel
Strand 4
A
463 467anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 518first strand
Strand 2
A
529 538anti-parallel
Strand 3
A
578 584anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
521 525first strand
Strand 2
A
602 611parallel
Strand 3
A
589 596anti-parallel
Strand 4
A
552 554anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 622first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
658 661anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 622first strand
Strand 2
A
644 652anti-parallel
Strand 3
A
685 690anti-parallel
Strand 4
A
677 682anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 638first strand
Strand 2
A
705 715parallel
Strand 3
A
694 702anti-parallel
Strand 4
A
668 671anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
721 724first strand
Strand 2
A
759 761anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
738 739first strand
Strand 2
A
822 823anti-parallel
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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
747 748first strand
Strand 2
A
754 756anti-parallel
Strand 3
A
768 771anti-parallel
Strand 4
A
780 784anti-parallel
Strand 5
A
796 805anti-parallel
Strand 6
A
829 837anti-parallel
Strand 7
A
846 855anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
91 98anti-parallel
Strand 5
B
115 117anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
16 25anti-parallel
Strand 3
C
78 86anti-parallel
Strand 4
C
68 73anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
92 99anti-parallel
Strand 5
C
114 117anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
92 99anti-parallel
Strand 5
C
121 123anti-parallel
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