Analysis of interatomic Contacts of Structural Units in PDB entry:
8OPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OPT entry

There are 3 chains in PDB entry 8OPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 202VAL 1334
D
 U 13 G 66
B
 GLY 136LYS 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 8OPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
210 227Right-handed alpha
Helix 2
AA2
A
255 265Right-handed alpha
Helix 3
AA3
A
265 284Right-handed alpha
Helix 4
AA4
A
288 307Right-handed alpha
Helix 5
AA5
A
309 328Right-handed alpha
Helix 6
AA6
A
340 345Right-handed alpha
Helix 7
AA7
A
364 379Right-handed alpha
Helix 8
AA8
A
416 430Right-handed alpha
Helix 9
AA9
A
432 448Right-handed alpha
Helix 10
AB1
A
460 473Right-handed alpha
Helix 11
AB2
A
491 495Right-handed 310
Helix 12
AB3
A
550 563Right-handed alpha
Helix 13
AB4
A
611 630Right-handed alpha
Helix 14
AB5
A
951 957Right-handed alpha
Helix 15
AB6
A
994 1013Right-handed alpha
Helix 16
AB7
A
1015 1037Right-handed alpha
Helix 17
AB8
A
1075 1090Right-handed alpha
Helix 18
AB9
A
1124 1141Right-handed alpha
Helix 19
AC1
A
1141 1158Right-handed alpha
Helix 20
AC2
A
1169 1183Right-handed alpha
Helix 21
AC3
A
1219 1224Right-handed alpha
Helix 22
AC4
A
1233 1247Right-handed alpha
Helix 23
AC5
A
1266 1270Right-handed 310
Helix 24
AC6
A
1293 1311Right-handed alpha
Helix 25
AC7
A
1324 1330Right-handed alpha
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There are 6 sheets in PDB entry 8OPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
244 246anti-parallel
Strand 3
A
251 253anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 339first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
406 410parallel
Strand 4
A
395 400anti-parallel
Strand 5
A
382 388anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 503first strand
Strand 2
A
506 512anti-parallel
Strand 3
A
532 538anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
600 604anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1045first strand
Strand 2
A
1059 1065anti-parallel
Strand 3
A
1116 1122parallel
Strand 4
A
1106 1111anti-parallel
Strand 5
A
1093 1099anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1205 1206first strand
Strand 2
A
1209 1210anti-parallel
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