Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OQ0 entry

There is 1 chain in PDB entry 8OQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 155THR 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 8OQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 172Right-handed alpha
Helix 2
AA2
A
181 185Right-handed 310
Helix 3
AA3
A
203 207Right-handed 310
Helix 4
AA4
A
248 251Right-handed 310
Helix 5
AA5
A
258 269Right-handed alpha
Helix 6
AA6
A
318 324Right-handed alpha
Helix 7
AA7
A
347 350Right-handed 310
Helix 8
AA8
A
478 485Right-handed alpha
Helix 9
AA9
A
570 574Right-handed 310
Helix 10
AB1
A
612 619Right-handed alpha
Helix 11
AB2
A
753 757Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 8OQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
165 166anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
195 198parallel
Strand 3
A
210 216anti-parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
227 231anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
271 274parallel
Strand 3
A
297 301parallel
Strand 4
A
333 339parallel
Strand 5
A
359 365parallel
Strand 6
A
390 395parallel
Strand 7
A
411 417parallel
Strand 8
A
438 446parallel
Strand 9
A
462 469parallel
Strand 10
A
501 506parallel
Strand 11
A
544 546parallel
Strand 12
A
562 564parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
306 309parallel
Strand 3
A
342 344parallel
Strand 4
A
368 370parallel
Strand 5
A
398 400parallel
Strand 6
A
420 422parallel
Strand 7
A
449 451parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 355first strand
Strand 2
A
374 377parallel
Strand 3
A
404 408parallel
Strand 4
A
426 430parallel
Strand 5
A
455 459parallel
Strand 6
A
488 490parallel
Strand 7
A
520 524parallel
Strand 8
A
554 556parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
509 511parallel
Strand 3
A
549 550parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 595first strand
Strand 2
A
728 742anti-parallel
Strand 3
A
625 637anti-parallel
Strand 4
A
642 655anti-parallel
Strand 5
A
667 677anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
585 595first strand
Strand 2
A
728 742anti-parallel
Strand 3
A
723 724anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 601first strand
Strand 2
A
604 611anti-parallel
Strand 3
A
711 719anti-parallel
Strand 4
A
696 706anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 601first strand
Strand 2
A
604 611anti-parallel
Strand 3
A
758 760anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
683 685first strand
Strand 2
A
690 691anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il