Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OQ3 entry

There are 4 chains in PDB entry 8OQ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 23	ASN 1663
C	GLN 1	SER 123
D	SER 23	ASN 1663
F	GLN 1	SER 123

There are 68 helices in PDB entry 8OQ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed 310
Helix 2	AA2	A	303	311	Right-handed alpha
Helix 3	AA3	A	316	320	Right-handed 310
Helix 4	AA4	A	448	452	Right-handed 310
Helix 5	AA5	A	522	526	Right-handed 310
Helix 6	AA6	A	600	606	Right-handed alpha
Helix 7	AA7	A	612	622	Right-handed alpha
Helix 8	AA8	A	634	643	Right-handed alpha
Helix 9	AA9	A	754	759	Right-handed alpha
Helix 10	AB1	A	1000	1004	Right-handed 310
Helix 11	AB2	A	1012	1032	Right-handed alpha
Helix 12	AB3	A	1039	1057	Right-handed alpha
Helix 13	AB4	A	1075	1090	Right-handed alpha
Helix 14	AB5	A	1097	1112	Right-handed alpha
Helix 15	AB6	A	1130	1134	Right-handed 310
Helix 16	AB7	A	1138	1153	Right-handed alpha
Helix 17	AB8	A	1164	1177	Right-handed alpha
Helix 18	AB9	A	1185	1198	Right-handed alpha
Helix 19	AC1	A	1203	1213	Right-handed alpha
Helix 20	AC2	A	1214	1218	Right-handed 310
Helix 21	AC3	A	1225	1243	Right-handed alpha
Helix 22	AC4	A	1248	1260	Right-handed alpha
Helix 23	AC5	A	1268	1286	Right-handed alpha
Helix 24	AC6	A	1414	1423	Right-handed alpha
Helix 25	AC7	A	1497	1501	Right-handed 310
Helix 26	AC8	A	1528	1537	Right-handed alpha
Helix 27	AC9	A	1590	1595	Right-handed alpha
Helix 28	AD1	A	1609	1611	Right-handed 310
Helix 29	AD2	A	1635	1639	Right-handed 310
Helix 30	AD3	A	1642	1657	Right-handed alpha
Helix 31	AD4	C	62	65	Right-handed 310
Helix 32	AD5	C	87	91	Right-handed 310
Helix 33	AD6	D	77	81	Right-handed 310
Helix 34	AD7	D	303	309	Right-handed alpha
Helix 35	AD8	D	315	320	Right-handed 310
Helix 36	AD9	D	432	436	Right-handed 310
Helix 37	AE1	D	448	452	Right-handed 310
Helix 38	AE2	D	522	526	Right-handed 310
Helix 39	AE3	D	600	606	Right-handed alpha
Helix 40	AE4	D	612	623	Right-handed alpha
Helix 41	AE5	D	634	643	Right-handed alpha
Helix 42	AE6	D	754	760	Right-handed alpha
Helix 43	AE7	D	996	1004	Right-handed 310
Helix 44	AE8	D	1012	1032	Right-handed alpha
Helix 45	AE9	D	1033	1038	Right-handed alpha
Helix 46	AF1	D	1040	1055	Right-handed alpha
Helix 47	AF2	D	1075	1089	Right-handed alpha
Helix 48	AF3	D	1097	1111	Right-handed alpha
Helix 49	AF4	D	1130	1134	Right-handed 310
Helix 50	AF5	D	1138	1154	Right-handed alpha
Helix 51	AF6	D	1164	1179	Right-handed alpha
Helix 52	AF7	D	1185	1198	Right-handed alpha
Helix 53	AF8	D	1203	1213	Right-handed alpha
Helix 54	AF9	D	1214	1218	Right-handed 310
Helix 55	AG1	D	1225	1243	Right-handed alpha
Helix 56	AG2	D	1248	1259	Right-handed alpha
Helix 57	AG3	D	1268	1285	Right-handed alpha
Helix 58	AG4	D	1414	1423	Right-handed alpha
Helix 59	AG5	D	1430	1436	Right-handed alpha
Helix 60	AG6	D	1497	1501	Right-handed 310
Helix 61	AG7	D	1528	1537	Right-handed alpha
Helix 62	AG8	D	1587	1589	Right-handed 310
Helix 63	AG9	D	1590	1595	Right-handed alpha
Helix 64	AH1	D	1609	1611	Right-handed 310
Helix 65	AH2	D	1635	1639	Right-handed 310
Helix 66	AH3	D	1642	1657	Right-handed alpha
Helix 67	AH4	F	87	91	Right-handed 310
Helix 68	AH5	F	106	110	Right-handed 310

There are 51 sheets in PDB entry 8OQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	89	first strand
Strand 2	A	39	47	anti-parallel
Strand 3	A	25	31	anti-parallel
Strand 4	A	644	648	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	115	124	parallel
Strand 3	A	104	112	anti-parallel
Strand 4	A	53	61	anti-parallel
Strand 5	A	68	76	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	134	first strand
Strand 2	A	144	152	anti-parallel
Strand 3	A	188	194	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	218	224	parallel
Strand 3	A	202	210	anti-parallel
Strand 4	A	162	168	anti-parallel
Strand 5	A	174	181	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	238	first strand
Strand 2	A	251	259	anti-parallel
Strand 3	A	297	302	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	338	349	parallel
Strand 3	A	323	332	anti-parallel
Strand 4	A	267	277	anti-parallel
Strand 5	A	280	293	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	369	377	anti-parallel
Strand 3	A	406	412	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	438	445	parallel
Strand 3	A	420	426	anti-parallel
Strand 4	A	389	391	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	460	first strand
Strand 2	A	470	478	anti-parallel
Strand 3	A	514	520	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	507	first strand
Strand 2	A	489	496	anti-parallel
Strand 3	A	528	537	anti-parallel
Strand 4	A	545	554	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	567	first strand
Strand 2	A	580	587	anti-parallel
Strand 3	A	787	794	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	770	771	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	801	810	anti-parallel
Strand 4	A	814	817	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	777	first strand
Strand 2	A	592	599	anti-parallel
Strand 3	A	801	810	anti-parallel
Strand 4	A	821	824	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	829	834	first strand
Strand 2	A	845	853	anti-parallel
Strand 3	A	892	902	anti-parallel
Strand 4	A	872	873	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	838	840	first strand
Strand 2	A	922	932	parallel
Strand 3	A	906	916	anti-parallel
Strand 4	A	860	866	anti-parallel
Strand 5	A	882	888	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	936	947	first strand
Strand 2	A	1340	1350	anti-parallel
Strand 3	A	977	984	anti-parallel
Strand 4	A	1319	1324	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	957	962	first strand
Strand 2	A	1330	1337	anti-parallel
Strand 3	A	1293	1299	anti-parallel
Strand 4	A	1306	1311	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1060	1061	first strand
Strand 2	A	1065	1066	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1361	1369	first strand
Strand 2	A	1384	1392	anti-parallel
Strand 3	A	1457	1465	anti-parallel
Strand 4	A	1411	1413	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1427	1428	first strand
Strand 2	A	1443	1448	anti-parallel
Strand 3	A	1401	1406	anti-parallel
Strand 4	A	1475	1481	anti-parallel
Strand 5	A	1489	1493	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1504	1507	first strand
Strand 2	A	1510	1513	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1619	1621	first strand
Strand 2	A	1581	1587	parallel
Strand 3	A	1558	1564	anti-parallel
Strand 4	A	1541	1553	anti-parallel
Strand 5	A	1601	1607	anti-parallel
Strand 6	A	1627	1631	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	21	24	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	17	19	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	21	24	anti-parallel
Strand 3	C	78	84	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	117	122	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	117	122	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	110	113	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	89	first strand
Strand 2	D	39	47	anti-parallel
Strand 3	D	25	31	anti-parallel
Strand 4	D	644	648	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	35	first strand
Strand 2	D	115	124	parallel
Strand 3	D	104	112	anti-parallel
Strand 4	D	53	61	anti-parallel
Strand 5	D	68	76	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	134	first strand
Strand 2	D	144	152	anti-parallel
Strand 3	D	188	194	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	138	139	first strand
Strand 2	D	218	224	parallel
Strand 3	D	202	210	anti-parallel
Strand 4	D	162	168	anti-parallel
Strand 5	D	174	181	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	238	first strand
Strand 2	D	251	259	anti-parallel
Strand 3	D	298	302	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	244	first strand
Strand 2	D	338	349	parallel
Strand 3	D	323	332	anti-parallel
Strand 4	D	267	277	anti-parallel
Strand 5	D	280	293	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	356	first strand
Strand 2	D	369	377	anti-parallel
Strand 3	D	406	412	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	364	first strand
Strand 2	D	438	445	parallel
Strand 3	D	420	426	anti-parallel
Strand 4	D	388	391	anti-parallel
Strand 5	D	398	400	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	455	459	first strand
Strand 2	D	470	478	anti-parallel
Strand 3	D	514	520	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	499	507	first strand
Strand 2	D	489	496	anti-parallel
Strand 3	D	528	538	anti-parallel
Strand 4	D	544	554	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	567	first strand
Strand 2	D	580	587	anti-parallel
Strand 3	D	787	794	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	770	771	first strand
Strand 2	D	592	599	anti-parallel
Strand 3	D	801	810	anti-parallel
Strand 4	D	814	817	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	777	first strand
Strand 2	D	592	599	anti-parallel
Strand 3	D	801	810	anti-parallel
Strand 4	D	821	824	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	829	834	first strand
Strand 2	D	845	853	anti-parallel
Strand 3	D	892	902	anti-parallel
Strand 4	D	872	873	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	838	840	first strand
Strand 2	D	922	932	parallel
Strand 3	D	906	916	anti-parallel
Strand 4	D	860	866	anti-parallel
Strand 5	D	882	888	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	936	947	first strand
Strand 2	D	1339	1350	anti-parallel
Strand 3	D	977	985	anti-parallel
Strand 4	D	1319	1324	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	1331	1335	anti-parallel
Strand 3	D	1294	1299	anti-parallel
Strand 4	D	1306	1311	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1361	1369	first strand
Strand 2	D	1384	1392	anti-parallel
Strand 3	D	1457	1465	anti-parallel
Strand 4	D	1411	1413	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1398	1399	first strand
Strand 2	D	1450	1451	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1428	1429	first strand
Strand 2	D	1443	1447	anti-parallel
Strand 3	D	1402	1406	anti-parallel
Strand 4	D	1475	1480	anti-parallel
Strand 5	D	1489	1493	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1504	1507	first strand
Strand 2	D	1510	1513	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1619	1621	first strand
Strand 2	D	1581	1586	parallel
Strand 3	D	1559	1570	anti-parallel
Strand 4	D	1541	1553	anti-parallel
Strand 5	D	1601	1607	anti-parallel
Strand 6	D	1627	1631	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	117	122	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	117	122	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	112	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OQ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQ3