Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OQA entry

There are 5 chains in PDB entry 8OQA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 80	SER 479
B	ARG 80	SER 479
C	ARG 80	SER 479
D	ARG 80	SER 479
E	ARG 80	SER 479

There are 46 helices in PDB entry 8OQA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	80	84	Right-handed 310
Helix 2	AA2	A	131	134	Right-handed 310
Helix 3	AA3	A	147	153	Right-handed 310
Helix 4	AA4	A	233	235	Right-handed 310
Helix 5	AA5	A	281	300	Right-handed alpha
Helix 6	AA6	A	301	305	Right-handed 310
Helix 7	AA7	A	309	333	Right-handed alpha
Helix 8	AA8	A	342	380	Right-handed alpha
Helix 9	AA9	A	453	478	Right-handed alpha
Helix 10	AB1	B	80	84	Right-handed 310
Helix 11	AB2	B	131	134	Right-handed 310
Helix 12	AB3	B	147	152	Right-handed 310
Helix 13	AB4	B	232	235	Right-handed 310
Helix 14	AB5	B	281	288	Right-handed alpha
Helix 15	AB6	B	288	300	Right-handed alpha
Helix 16	AB7	B	301	305	Right-handed 310
Helix 17	AB8	B	309	333	Right-handed alpha
Helix 18	AB9	B	342	380	Right-handed alpha
Helix 19	AC1	B	453	478	Right-handed alpha
Helix 20	AC2	C	80	84	Right-handed 310
Helix 21	AC3	C	131	134	Right-handed 310
Helix 22	AC4	C	147	153	Right-handed 310
Helix 23	AC5	C	232	235	Right-handed 310
Helix 24	AC6	C	281	288	Right-handed alpha
Helix 25	AC7	C	288	300	Right-handed alpha
Helix 26	AC8	C	301	305	Right-handed 310
Helix 27	AC9	C	309	333	Right-handed alpha
Helix 28	AD1	C	342	380	Right-handed alpha
Helix 29	AD2	C	453	478	Right-handed alpha
Helix 30	AD3	D	131	134	Right-handed 310
Helix 31	AD4	D	147	153	Right-handed 310
Helix 32	AD5	D	232	235	Right-handed 310
Helix 33	AD6	D	281	300	Right-handed alpha
Helix 34	AD7	D	301	305	Right-handed 310
Helix 35	AD8	D	309	333	Right-handed alpha
Helix 36	AD9	D	342	380	Right-handed alpha
Helix 37	AE1	D	453	478	Right-handed alpha
Helix 38	AE2	E	80	84	Right-handed 310
Helix 39	AE3	E	131	134	Right-handed 310
Helix 40	AE4	E	147	152	Right-handed 310
Helix 41	AE5	E	232	235	Right-handed 310
Helix 42	AE6	E	281	300	Right-handed alpha
Helix 43	AE7	E	301	305	Right-handed 310
Helix 44	AE8	E	309	333	Right-handed alpha
Helix 45	AE9	E	342	380	Right-handed alpha
Helix 46	AF1	E	453	478	Right-handed alpha

There are 15 sheets in PDB entry 8OQA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	145	first strand
Strand 2	A	176	180	anti-parallel
Strand 3	A	185	197	anti-parallel
Strand 4	A	117	129	anti-parallel
Strand 5	A	97	112	anti-parallel
Strand 6	A	226	230	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	168	first strand
Strand 2	A	185	197	anti-parallel
Strand 3	A	117	129	anti-parallel
Strand 4	A	97	112	anti-parallel
Strand 5	A	237	239	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	209	218	anti-parallel
Strand 3	A	266	279	anti-parallel
Strand 4	A	248	262	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	145	first strand
Strand 2	B	176	180	anti-parallel
Strand 3	B	185	197	anti-parallel
Strand 4	B	117	129	anti-parallel
Strand 5	B	97	112	anti-parallel
Strand 6	B	226	230	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	168	first strand
Strand 2	B	185	197	anti-parallel
Strand 3	B	117	129	anti-parallel
Strand 4	B	97	112	anti-parallel
Strand 5	B	237	239	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	209	218	anti-parallel
Strand 3	B	267	279	anti-parallel
Strand 4	B	248	261	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	145	first strand
Strand 2	C	176	180	anti-parallel
Strand 3	C	185	197	anti-parallel
Strand 4	C	117	129	anti-parallel
Strand 5	C	97	112	anti-parallel
Strand 6	C	226	230	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	168	first strand
Strand 2	C	185	197	anti-parallel
Strand 3	C	117	129	anti-parallel
Strand 4	C	97	112	anti-parallel
Strand 5	C	237	239	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	209	218	anti-parallel
Strand 3	C	266	279	anti-parallel
Strand 4	C	248	262	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	145	first strand
Strand 2	D	176	180	anti-parallel
Strand 3	D	185	197	anti-parallel
Strand 4	D	117	129	anti-parallel
Strand 5	D	97	112	anti-parallel
Strand 6	D	226	230	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	168	first strand
Strand 2	D	185	197	anti-parallel
Strand 3	D	117	129	anti-parallel
Strand 4	D	97	112	anti-parallel
Strand 5	D	237	239	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	209	218	anti-parallel
Strand 3	D	267	279	anti-parallel
Strand 4	D	248	261	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	144	first strand
Strand 2	E	176	180	anti-parallel
Strand 3	E	185	197	anti-parallel
Strand 4	E	117	129	anti-parallel
Strand 5	E	97	112	anti-parallel
Strand 6	E	226	230	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	168	first strand
Strand 2	E	185	197	anti-parallel
Strand 3	E	117	129	anti-parallel
Strand 4	E	97	112	anti-parallel
Strand 5	E	237	239	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	161	first strand
Strand 2	E	209	218	anti-parallel
Strand 3	E	266	279	anti-parallel
Strand 4	E	248	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OQA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQA