Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OQK entry

There is 1 chain in PDB entry 8OQK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2PHE 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8OQK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 50Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
71 87Right-handed alpha
Helix 4
AA4
A
95 105Right-handed alpha
Helix 5
AA5
A
135 140Right-handed alpha
Helix 6
AA6
A
144 158Right-handed alpha
Helix 7
AA7
A
162 174Right-handed alpha
Helix 8
AA8
A
176 187Right-handed alpha
Helix 9
AA9
A
189 202Right-handed alpha
Helix 10
AB1
A
203 205Right-handed 310
Helix 11
AB2
A
207 225Right-handed alpha
Helix 12
AB3
A
226 229Right-handed 310
Helix 13
AB4
A
240 246Right-handed alpha
Helix 14
AB5
A
246 257Right-handed alpha
Helix 15
AB6
A
268 276Right-handed alpha
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There are 2 sheets in PDB entry 8OQK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 29first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
62 66parallel
Strand 5
A
90 94parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
236 239parallel
Strand 5
A
263 265parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il