Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OQL entry

There are 2 chains in PDB entry 8OQL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -13	SER 720
B	SER -13	GLU 606

There are118 helices in PDB entry 8OQL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	48	Right-handed alpha
Helix 2	AA2	A	49	52	Right-handed 310
Helix 3	AA3	A	69	74	Right-handed alpha
Helix 4	AA4	A	77	79	Right-handed 310
Helix 5	AA5	A	80	100	Right-handed alpha
Helix 6	AA6	A	115	123	Right-handed alpha
Helix 7	AA7	A	139	145	Right-handed 310
Helix 8	AA8	A	151	169	Right-handed alpha
Helix 9	AA9	A	177	185	Right-handed alpha
Helix 10	AB1	A	193	195	Right-handed 310
Helix 11	AB2	A	196	212	Right-handed alpha
Helix 12	AB3	A	219	223	Right-handed 310
Helix 13	AB4	A	237	242	Right-handed alpha
Helix 14	AB5	A	244	253	Right-handed alpha
Helix 15	AB6	A	258	272	Right-handed alpha
Helix 16	AB7	A	275	292	Right-handed alpha
Helix 17	AB8	A	293	304	Right-handed alpha
Helix 18	AB9	A	304	312	Right-handed alpha
Helix 19	AC1	A	334	346	Right-handed alpha
Helix 20	AC2	A	357	378	Right-handed alpha
Helix 21	AC3	A	382	391	Right-handed alpha
Helix 22	AC4	A	398	403	Right-handed 310
Helix 23	AC5	A	415	425	Right-handed alpha
Helix 24	AC6	A	444	449	Right-handed alpha
Helix 25	AC7	A	450	452	Right-handed 310
Helix 26	AC8	A	482	496	Right-handed alpha
Helix 27	AC9	A	510	528	Right-handed alpha
Helix 28	AD1	A	531	543	Right-handed alpha
Helix 29	AD2	A	547	555	Right-handed alpha
Helix 30	AD3	A	556	573	Right-handed alpha
Helix 31	AD4	A	582	593	Right-handed alpha
Helix 32	AD5	A	618	624	Right-handed alpha
Helix 33	AD6	A	631	653	Right-handed alpha
Helix 34	AD7	A	658	669	Right-handed alpha
Helix 35	AD8	A	673	677	Right-handed 310
Helix 36	AD9	A	680	685	Right-handed alpha
Helix 37	AE1	A	693	709	Right-handed alpha
Helix 38	AE2	A	710	713	Right-handed 310
Helix 39	AE3	B	31	48	Right-handed alpha
Helix 40	AE4	B	49	52	Right-handed 310
Helix 41	AE5	B	69	74	Right-handed alpha
Helix 42	AE6	B	75	76	Right-handed 310
Helix 43	AE7	B	77	79	Right-handed 310
Helix 44	AE8	B	80	100	Right-handed alpha
Helix 45	AE9	B	115	123	Right-handed alpha
Helix 46	AF1	B	140	145	Right-handed 310
Helix 47	AF2	B	151	161	Right-handed alpha
Helix 48	AF3	B	161	169	Right-handed alpha
Helix 49	AF4	B	177	184	Right-handed alpha
Helix 50	AF5	B	193	195	Right-handed 310
Helix 51	AF6	B	196	212	Right-handed alpha
Helix 52	AF7	B	219	223	Right-handed 310
Helix 53	AF8	B	235	242	Right-handed alpha
Helix 54	AF9	B	244	253	Right-handed alpha
Helix 55	AG1	B	258	273	Right-handed alpha
Helix 56	AG2	B	275	292	Right-handed alpha
Helix 57	AG3	B	293	304	Right-handed alpha
Helix 58	AG4	B	304	312	Right-handed alpha
Helix 59	AG5	B	334	347	Right-handed alpha
Helix 60	AG6	B	357	378	Right-handed alpha
Helix 61	AG7	B	382	392	Right-handed alpha
Helix 62	AG8	B	398	403	Right-handed 310
Helix 63	AG9	B	415	425	Right-handed alpha
Helix 64	AH1	B	444	450	Right-handed alpha
Helix 65	AH2	B	454	456	Right-handed 310
Helix 66	AH3	B	482	496	Right-handed alpha
Helix 67	AH4	B	510	528	Right-handed alpha
Helix 68	AH5	B	531	543	Right-handed alpha
Helix 69	AH6	B	547	556	Right-handed alpha
Helix 70	AH7	B	556	573	Right-handed alpha
Helix 71	AH8	B	582	593	Right-handed alpha
Helix 72	AH9	B	618	624	Right-handed alpha
Helix 73	AI1	B	631	653	Right-handed alpha
Helix 74	AI2	B	658	671	Right-handed alpha
Helix 75	AI3	B	673	677	Right-handed 310
Helix 76	AI4	B	680	685	Right-handed alpha
Helix 77	AI5	B	693	709	Right-handed alpha
Helix 78	AI6	B	710	713	Right-handed 310
Helix 79	AI7	B	715	719	Right-handed 310
Helix 80	AI8	C	21	26	Right-handed 310
Helix 81	AI9	C	27	43	Right-handed alpha
Helix 82	AJ1	C	47	49	Right-handed 310
Helix 83	AJ2	C	62	66	Right-handed 310
Helix 84	AJ3	C	68	77	Right-handed alpha
Helix 85	AJ4	C	80	84	Right-handed 310
Helix 86	AJ5	C	90	92	Right-handed 310
Helix 87	AJ6	C	93	108	Right-handed alpha
Helix 88	AJ7	C	137	145	Right-handed alpha
Helix 89	AJ8	C	148	161	Right-handed alpha
Helix 90	AJ9	C	163	184	Right-handed alpha
Helix 91	AK1	C	214	220	Right-handed alpha
Helix 92	AK2	C	233	242	Right-handed alpha
Helix 93	AK3	C	272	278	Right-handed alpha
Helix 94	AK4	C	302	315	Right-handed alpha
Helix 95	AK5	C	317	321	Right-handed 310
Helix 96	AK6	C	330	342	Right-handed alpha
Helix 97	AK7	C	344	348	Right-handed 310
Helix 98	AK8	C	353	358	Right-handed alpha
Helix 99	AK9	C	360	380	Right-handed alpha
Helix 100	AL1	D	27	43	Right-handed alpha
Helix 101	AL2	D	47	49	Right-handed 310
Helix 102	AL3	D	62	66	Right-handed 310
Helix 103	AL4	D	68	77	Right-handed alpha
Helix 104	AL5	D	90	92	Right-handed 310
Helix 105	AL6	D	93	109	Right-handed alpha
Helix 106	AL7	D	137	142	Right-handed alpha
Helix 107	AL8	D	148	161	Right-handed alpha
Helix 108	AL9	D	163	184	Right-handed alpha
Helix 109	AM1	D	214	220	Right-handed alpha
Helix 110	AM2	D	234	242	Right-handed alpha
Helix 111	AM3	D	272	279	Right-handed alpha
Helix 112	AM4	D	302	315	Right-handed alpha
Helix 113	AM5	D	317	321	Right-handed 310
Helix 114	AM6	D	330	342	Right-handed alpha
Helix 115	AM7	D	344	348	Right-handed 310
Helix 116	AM8	D	353	358	Right-handed alpha
Helix 117	AM9	D	360	362	Right-handed 310
Helix 118	AN1	D	363	380	Right-handed alpha

There are 13 sheets in PDB entry 8OQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	15	20	anti-parallel
Strand 3	A	54	59	parallel
Strand 4	A	105	109	parallel
Strand 5	A	126	130	parallel
Strand 6	A	189	191	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	113	114	parallel
Strand 3	A	137	138	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	396	first strand
Strand 2	A	350	354	parallel
Strand 3	A	327	331	parallel
Strand 4	A	407	410	parallel
Strand 5	A	435	438	parallel
Strand 6	A	458	462	parallel
Strand 7	A	472	477	anti-parallel
Strand 8	A	499	504	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	607	first strand
Strand 2	A	612	615	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	10	first strand
Strand 2	B	15	20	anti-parallel
Strand 3	B	54	59	parallel
Strand 4	B	105	109	parallel
Strand 5	B	126	130	parallel
Strand 6	B	189	191	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	113	114	parallel
Strand 3	B	137	138	parallel
Strand 4	B	175	176	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	396	first strand
Strand 2	B	350	354	parallel
Strand 3	B	327	331	parallel
Strand 4	B	407	410	parallel
Strand 5	B	435	438	parallel
Strand 6	B	458	462	parallel
Strand 7	B	472	477	anti-parallel
Strand 8	B	499	504	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	608	first strand
Strand 2	B	611	615	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	687	688	first strand
Strand 2	B	691	692	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	261	271	anti-parallel
Strand 3	C	113	121	anti-parallel
Strand 4	C	51	57	parallel
Strand 5	C	86	89	parallel
Strand 6	D	86	89	anti-parallel
Strand 7	D	51	57	parallel
Strand 8	D	113	121	parallel
Strand 9	D	261	271	anti-parallel
Strand 10	D	16	17	anti-parallel

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There are 18 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	326	first strand
Strand 2	C	383	390	parallel
Strand 3	C	394	402	anti-parallel
Strand 4	C	284	293	anti-parallel
Strand 5	C	5	12	anti-parallel
Strand 6	C	261	271	anti-parallel
Strand 7	C	113	121	anti-parallel
Strand 8	C	51	57	parallel
Strand 9	C	86	89	parallel
Strand 10	D	86	89	anti-parallel
Strand 11	D	51	57	parallel
Strand 12	D	113	121	parallel
Strand 13	D	261	271	anti-parallel
Strand 14	D	5	12	anti-parallel
Strand 15	D	284	293	anti-parallel
Strand 16	D	394	402	anti-parallel
Strand 17	D	383	389	anti-parallel
Strand 18	D	323	326	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	195	first strand
Strand 2	C	201	203	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	201	203	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OQL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQL