Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OQW entry

There are 4 chains in PDB entry 8OQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 2THR 279
B
 MET 2VAL 284
C
 MET 2VAL 284
D
 MET 2THR 279
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 8OQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 50Right-handed alpha
Helix 2
AA2
A
51 54Right-handed 310
Helix 3
AA3
A
73 85Right-handed alpha
Helix 4
AA4
A
95 106Right-handed alpha
Helix 5
AA5
A
136 141Right-handed alpha
Helix 6
AA6
A
145 159Right-handed alpha
Helix 7
AA7
A
163 174Right-handed alpha
Helix 8
AA8
A
177 188Right-handed alpha
Helix 9
AA9
A
190 198Right-handed alpha
Helix 10
AB1
A
199 205Right-handed alpha
Helix 11
AB2
A
208 226Right-handed alpha
Helix 12
AB3
A
227 230Right-handed 310
Helix 13
AB4
A
241 247Right-handed alpha
Helix 14
AB5
A
247 259Right-handed alpha
Helix 15
AB6
A
269 279Right-handed alpha
Helix 16
AB7
B
38 50Right-handed alpha
Helix 17
AB8
B
51 54Right-handed 310
Helix 18
AB9
B
70 72Right-handed 310
Helix 19
AC1
B
73 85Right-handed alpha
Helix 20
AC2
B
95 106Right-handed alpha
Helix 21
AC3
B
136 141Right-handed alpha
Helix 22
AC4
B
145 159Right-handed alpha
Helix 23
AC5
B
163 174Right-handed alpha
Helix 24
AC6
B
177 187Right-handed alpha
Helix 25
AC7
B
190 199Right-handed alpha
Helix 26
AC8
B
199 205Right-handed alpha
Helix 27
AC9
B
208 226Right-handed alpha
Helix 28
AD1
B
227 230Right-handed 310
Helix 29
AD2
B
241 247Right-handed alpha
Helix 30
AD3
B
247 259Right-handed alpha
Helix 31
AD4
B
269 279Right-handed alpha
Helix 32
AD5
C
38 50Right-handed alpha
Helix 33
AD6
C
51 54Right-handed 310
Helix 34
AD7
C
73 85Right-handed alpha
Helix 35
AD8
C
95 106Right-handed alpha
Helix 36
AD9
C
136 141Right-handed alpha
Helix 37
AE1
C
145 159Right-handed alpha
Helix 38
AE2
C
163 174Right-handed alpha
Helix 39
AE3
C
177 188Right-handed alpha
Helix 40
AE4
C
190 197Right-handed alpha
Helix 41
AE5
C
199 205Right-handed alpha
Helix 42
AE6
C
208 227Right-handed alpha
Helix 43
AE7
C
241 247Right-handed alpha
Helix 44
AE8
C
247 259Right-handed alpha
Helix 45
AE9
C
269 279Right-handed alpha
Helix 46
AF1
D
38 49Right-handed alpha
Helix 47
AF2
D
50 54Right-handed 310
Helix 48
AF3
D
73 85Right-handed alpha
Helix 49
AF4
D
95 106Right-handed alpha
Helix 50
AF5
D
136 141Right-handed alpha
Helix 51
AF6
D
145 159Right-handed alpha
Helix 52
AF7
D
163 175Right-handed alpha
Helix 53
AF8
D
177 188Right-handed alpha
Helix 54
AF9
D
190 199Right-handed alpha
Helix 55
AG1
D
199 205Right-handed alpha
Helix 56
AG2
D
208 226Right-handed alpha
Helix 57
AG3
D
227 230Right-handed 310
Helix 58
AG4
D
241 247Right-handed alpha
Helix 59
AG5
D
247 259Right-handed alpha
Helix 60
AG6
D
269 279Right-handed alpha
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There are 10 sheets in PDB entry 8OQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 29first strand
Strand 2
A
13 19anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
58 66parallel
Strand 5
A
86 94parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 133first strand
Strand 2
A
119 124anti-parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
237 240parallel
Strand 5
A
262 266parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 29first strand
Strand 2
B
13 19anti-parallel
Strand 3
B
3 8anti-parallel
Strand 4
B
61 66parallel
Strand 5
B
91 94parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
86 87parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 133first strand
Strand 2
B
119 124anti-parallel
Strand 3
B
110 115anti-parallel
Strand 4
B
237 240parallel
Strand 5
B
262 266parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 30first strand
Strand 2
C
12 19anti-parallel
Strand 3
C
3 8anti-parallel
Strand 4
C
61 66parallel
Strand 5
C
91 94parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 59first strand
Strand 2
C
86 87parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
129 133first strand
Strand 2
C
119 124anti-parallel
Strand 3
C
110 115anti-parallel
Strand 4
C
237 240parallel
Strand 5
C
262 266parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
22 30first strand
Strand 2
D
12 19anti-parallel
Strand 3
D
3 8anti-parallel
Strand 4
D
58 66parallel
Strand 5
D
86 94parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 133first strand
Strand 2
D
119 124anti-parallel
Strand 3
D
110 115anti-parallel
Strand 4
D
237 240parallel
Strand 5
D
262 266parallel
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