Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OQX entry

There are 2 chains in PDB entry 8OQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 283
B
 MET 1THR 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8OQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 49Right-handed alpha
Helix 2
AA2
A
50 53Right-handed 310
Helix 3
AA3
A
69 71Right-handed 310
Helix 4
AA4
A
72 84Right-handed alpha
Helix 5
AA5
A
94 105Right-handed alpha
Helix 6
AA6
A
135 140Right-handed alpha
Helix 7
AA7
A
144 158Right-handed alpha
Helix 8
AA8
A
161 174Right-handed alpha
Helix 9
AA9
A
176 186Right-handed alpha
Helix 10
AB1
A
189 198Right-handed alpha
Helix 11
AB2
A
198 204Right-handed alpha
Helix 12
AB3
A
207 225Right-handed alpha
Helix 13
AB4
A
226 229Right-handed 310
Helix 14
AB5
A
240 246Right-handed alpha
Helix 15
AB6
A
246 258Right-handed alpha
Helix 16
AB7
A
268 278Right-handed alpha
Helix 17
AB8
B
37 49Right-handed alpha
Helix 18
AB9
B
50 53Right-handed 310
Helix 19
AC1
B
69 71Right-handed 310
Helix 20
AC2
B
72 82Right-handed alpha
Helix 21
AC3
B
94 105Right-handed alpha
Helix 22
AC4
B
135 140Right-handed alpha
Helix 23
AC5
B
144 158Right-handed alpha
Helix 24
AC6
B
162 173Right-handed alpha
Helix 25
AC7
B
176 186Right-handed alpha
Helix 26
AC8
B
189 198Right-handed alpha
Helix 27
AC9
B
198 203Right-handed alpha
Helix 28
AD1
B
207 225Right-handed alpha
Helix 29
AD2
B
226 229Right-handed 310
Helix 30
AD3
B
240 246Right-handed alpha
Helix 31
AD4
B
246 258Right-handed alpha
Helix 32
AD5
B
268 276Right-handed alpha
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There are 4 sheets in PDB entry 8OQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
11 18anti-parallel
Strand 3
A
2 7anti-parallel
Strand 4
A
57 65parallel
Strand 5
A
85 93parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 132first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
236 239parallel
Strand 5
A
261 265parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 29first strand
Strand 2
B
11 18anti-parallel
Strand 3
B
2 7anti-parallel
Strand 4
B
57 65parallel
Strand 5
B
85 93parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 132first strand
Strand 2
B
118 123anti-parallel
Strand 3
B
109 114anti-parallel
Strand 4
B
236 239parallel
Strand 5
B
261 265parallel
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