Analysis of interatomic Contacts of Structural Units in PDB entry:
8OQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OQY entry

There are 4 chains in PDB entry 8OQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34ILE 699
B
 LEU 73ILE 467
C
 THR 2LEU 238
D
 ASN 2PRO 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8OQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 40Right-handed 310
Helix 2
AA2
A
78 87Right-handed alpha
Helix 3
AA3
A
104 114Right-handed alpha
Helix 4
AA4
A
153 157Right-handed 310
Helix 5
AA5
A
170 173Right-handed 310
Helix 6
AA6
A
185 200Right-handed alpha
Helix 7
AA7
A
226 240Right-handed alpha
Helix 8
AA8
A
298 314Right-handed alpha
Helix 9
AA9
A
317 321Right-handed 310
Helix 10
AB1
A
337 349Right-handed alpha
Helix 11
AB2
A
355 357Right-handed 310
Helix 12
AB3
A
383 386Right-handed 310
Helix 13
AB4
A
387 407Right-handed alpha
Helix 14
AB5
A
426 432Right-handed alpha
Helix 15
AB6
A
459 464Right-handed 310
Helix 16
AB7
A
472 478Right-handed alpha
Helix 17
AB8
A
481 502Right-handed alpha
Helix 18
AB9
A
514 527Right-handed alpha
Helix 19
AC1
A
531 536Right-handed alpha
Helix 20
AC2
A
539 546Right-handed 310
Helix 21
AC3
A
561 576Right-handed alpha
Helix 22
AC4
A
582 588Right-handed alpha
Helix 23
AC5
A
589 592Right-handed 310
Helix 24
AC6
A
632 637Right-handed alpha
Helix 25
AC7
A
665 693Right-handed alpha
Helix 26
AC8
A
693 698Right-handed alpha
Helix 27
AC9
B
74 104Right-handed alpha
Helix 28
AD1
B
161 190Right-handed alpha
Helix 29
AD2
B
195 214Right-handed alpha
Helix 30
AD3
B
218 241Right-handed alpha
Helix 31
AD4
B
242 244Right-handed 310
Helix 32
AD5
B
245 256Right-handed alpha
Helix 33
AD6
B
384 398Right-handed alpha
Helix 34
AD7
B
404 428Right-handed alpha
Helix 35
AD8
B
436 463Right-handed alpha
Helix 36
AD9
C
3 25Right-handed alpha
Helix 37
AE1
C
28 61Right-handed alpha
Helix 38
AE2
C
64 100Right-handed alpha
Helix 39
AE3
C
112 138Right-handed alpha
Helix 40
AE4
C
139 141Right-handed 310
Helix 41
AE5
C
154 183Right-handed alpha
Helix 42
AE6
C
185 206Right-handed alpha
Helix 43
AE7
C
208 231Right-handed alpha
Helix 44
AE8
D
7 22Right-handed alpha
Helix 45
AE9
D
26 42Right-handed alpha
Helix 46
AF1
D
49 82Right-handed alpha
Helix 47
AF2
D
83 85Right-handed 310
Helix 48
AF3
D
86 92Right-handed alpha
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There are 5 sheets in PDB entry 8OQY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
658 663anti-parallel
Strand 3
A
212 217anti-parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
94 99parallel
Strand 6
A
120 124parallel
Strand 7
A
180 183parallel
Strand 8
A
47 49anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
59 62parallel
Strand 3
A
53 54anti-parallel
Strand 4
A
649 651anti-parallel
Strand 5
A
248 250anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
375 379parallel
Strand 3
A
438 442anti-parallel
Strand 4
A
359 365parallel
Strand 5
A
275 281parallel
Strand 6
A
324 330parallel
Strand 7
A
253 259anti-parallel
Strand 8
A
626 630anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 579first strand
Strand 2
A
619 623anti-parallel
Strand 3
A
601 605anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
D
93 94anti-parallel
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