Analysis of interatomic Contacts of Structural Units in PDB entry:
8OR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OR4 entry

There are 7 chains in PDB entry 8OR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 18GLU 763
B
 TRP 27TRP 101
C
 TYR 6LEU 958
D
 PRO 2CYS 166
E
 VAL 95GLN 419
G
 GLN 5HIS 65
H
 THR 165ALA 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 8OR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 32Right-handed alpha
Helix 2
AA2
A
39 41Right-handed 310
Helix 3
AA3
A
42 53Right-handed alpha
Helix 4
AA4
A
87 107Right-handed alpha
Helix 5
AA5
A
115 137Right-handed alpha
Helix 6
AA6
A
137 144Right-handed alpha
Helix 7
AA7
A
159 172Right-handed alpha
Helix 8
AA8
A
174 193Right-handed alpha
Helix 9
AA9
A
198 211Right-handed alpha
Helix 10
AB1
A
225 255Right-handed alpha
Helix 11
AB2
A
257 279Right-handed alpha
Helix 12
AB3
A
280 282Right-handed 310
Helix 13
AB4
A
283 296Right-handed alpha
Helix 14
AB5
A
299 313Right-handed alpha
Helix 15
AB6
A
315 327Right-handed alpha
Helix 16
AB7
A
332 356Right-handed alpha
Helix 17
AB8
A
356 362Right-handed alpha
Helix 18
AB9
A
362 385Right-handed alpha
Helix 19
AC1
A
388 405Right-handed alpha
Helix 20
AC2
A
406 412Right-handed alpha
Helix 21
AC3
A
416 430Right-handed alpha
Helix 22
AC4
A
441 456Right-handed alpha
Helix 23
AC5
A
459 476Right-handed alpha
Helix 24
AC6
A
481 496Right-handed alpha
Helix 25
AC7
A
497 528Right-handed alpha
Helix 26
AC8
A
556 565Right-handed alpha
Helix 27
AC9
A
568 573Right-handed alpha
Helix 28
AD1
A
605 612Right-handed alpha
Helix 29
AD2
A
623 630Right-handed alpha
Helix 30
AD3
A
632 646Right-handed alpha
Helix 31
AD4
A
688 722Right-handed alpha
Helix 32
AD5
A
727 737Right-handed alpha
Helix 33
AD6
A
745 759Right-handed alpha
Helix 34
AD7
B
80 92Right-handed alpha
Helix 35
AD8
C
7 16Right-handed alpha
Helix 36
AD9
C
19 36Right-handed alpha
Helix 37
AE1
C
42 57Right-handed alpha
Helix 38
AE2
C
61 69Right-handed alpha
Helix 39
AE3
C
83 95Right-handed alpha
Helix 40
AE4
C
99 115Right-handed alpha
Helix 41
AE5
C
128 139Right-handed alpha
Helix 42
AE6
C
140 143Right-handed 310
Helix 43
AE7
C
148 165Right-handed alpha
Helix 44
AE8
C
166 171Right-handed 310
Helix 45
AE9
C
172 181Right-handed alpha
Helix 46
AF1
C
182 186Right-handed 310
Helix 47
AF2
C
188 206Right-handed alpha
Helix 48
AF3
C
212 226Right-handed alpha
Helix 49
AF4
C
232 245Right-handed alpha
Helix 50
AF5
C
249 265Right-handed alpha
Helix 51
AF6
C
271 285Right-handed alpha
Helix 52
AF7
C
291 303Right-handed alpha
Helix 53
AF8
C
346 364Right-handed alpha
Helix 54
AF9
C
374 383Right-handed alpha
Helix 55
AG1
C
387 406Right-handed alpha
Helix 56
AG2
C
423 443Right-handed alpha
Helix 57
AG3
C
447 465Right-handed alpha
Helix 58
AG4
C
472 486Right-handed alpha
Helix 59
AG5
C
490 507Right-handed alpha
Helix 60
AG6
C
513 515Right-handed 310
Helix 61
AG7
C
516 528Right-handed alpha
Helix 62
AG8
C
532 549Right-handed alpha
Helix 63
AG9
C
561 577Right-handed alpha
Helix 64
AH1
C
582 601Right-handed alpha
Helix 65
AH2
C
602 606Right-handed 310
Helix 66
AH3
C
607 621Right-handed alpha
Helix 67
AH4
C
625 635Right-handed alpha
Helix 68
AH5
C
644 650Right-handed alpha
Helix 69
AH6
C
651 657Right-handed alpha
Helix 70
AH7
C
666 677Right-handed alpha
Helix 71
AH8
C
683 687Right-handed 310
Helix 72
AH9
C
690 695Right-handed alpha
Helix 73
AI1
C
696 701Right-handed 310
Helix 74
AI2
C
702 720Right-handed alpha
Helix 75
AI3
C
735 743Right-handed alpha
Helix 76
AI4
C
758 762Right-handed 310
Helix 77
AI5
C
763 768Right-handed alpha
Helix 78
AI6
C
789 806Right-handed alpha
Helix 79
AI7
C
810 813Right-handed 310
Helix 80
AI8
C
814 819Right-handed alpha
Helix 81
AI9
C
827 836Right-handed alpha
Helix 82
AJ1
C
869 877Right-handed alpha
Helix 83
AJ2
C
883 887Right-handed 310
Helix 84
AJ3
C
910 917Right-handed alpha
Helix 85
AJ4
C
928 933Right-handed alpha
Helix 86
AJ5
C
948 953Right-handed 310
Helix 87
AJ6
D
20 23Right-handed 310
Helix 88
AJ7
D
24 33Right-handed alpha
Helix 89
AJ8
D
51 61Right-handed alpha
Helix 90
AJ9
D
62 67Right-handed 310
Helix 91
AK1
D
92 100Right-handed alpha
Helix 92
AK2
D
102 117Right-handed alpha
Helix 93
AK3
D
120 134Right-handed alpha
Helix 94
AK4
D
137 144Right-handed 310
Helix 95
AK5
D
155 163Right-handed alpha
Helix 96
AK6
E
101 111Right-handed alpha
Helix 97
AK7
E
113 121Right-handed alpha
Helix 98
AK8
E
124 132Right-handed alpha
Helix 99
AK9
E
148 159Right-handed alpha
Helix 100
AL1
E
194 202Right-handed alpha
Helix 101
AL2
E
219 229Right-handed 310
Helix 102
AL3
E
251 255Right-handed 310
Helix 103
AL4
G
25 32Right-handed alpha
Helix 104
AL5
H
182 188Right-handed alpha
Helix 105
AL6
H
208 218Right-handed alpha
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There are 4 sheets in PDB entry 8OR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 539first strand
Strand 2
B
30 31parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
13 16anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 141first strand
Strand 2
E
416 417parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
185 189first strand
Strand 2
E
210 214parallel
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