Analysis of interatomic Contacts of Structural Units in PDB entry:
8ORA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ORA entry

There is 1 chain in PDB entry 8ORA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8ORA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 23Right-handed alpha
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
38 42Right-handed 310
Helix 4
AA4
A
52 63Right-handed alpha
Helix 5
AA5
A
64 68Right-handed 310
Helix 6
AA6
A
85 99Right-handed alpha
Helix 7
AA7
A
108 126Right-handed alpha
Helix 8
AA8
A
129 133Right-handed 310
Helix 9
AA9
A
147 171Right-handed alpha
Helix 10
AB1
A
175 182Right-handed alpha
Helix 11
AB2
A
192 203Right-handed alpha
Helix 12
AB3
A
218 232Right-handed alpha
Helix 13
AB4
A
253 264Right-handed alpha
Helix 14
AB5
A
274 281Right-handed 310
Helix 15
AB6
A
284 289Right-handed 310
Helix 16
AB7
A
290 294Right-handed 310
Helix 17
AB8
A
300 305Right-handed alpha
Helix 18
AB9
A
318 324Right-handed alpha
Helix 19
AC1
A
330 334Right-handed 310
Helix 20
AC2
A
345 350Right-handed 310
Helix 21
AC3
A
358 393Right-handed alpha
Helix 22
AC4
A
416 431Right-handed alpha
Helix 23
AC5
A
456 479Right-handed alpha
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There are 2 sheets in PDB entry 8ORA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
296 299anti-parallel
Strand 4
A
267 271parallel
Strand 5
A
235 242parallel
Strand 6
A
183 188parallel
Strand 7
A
205 209parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
437 440anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il