Analysis of interatomic Contacts of Structural Units in PDB entry:
8ORD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ORD entry

There are 5 chains in PDB entry 8ORD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	PHE 377
B	THR 8	PHE 377
C	THR 8	PHE 377
D	THR 8	PHE 377
E	THR 8	PHE 377

There are114 helices in PDB entry 8ORD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	63	Right-handed alpha
Helix 2	AA2	A	80	94	Right-handed alpha
Helix 3	AA3	A	99	103	Right-handed 310
Helix 4	AA4	A	114	128	Right-handed alpha
Helix 5	AA5	A	139	147	Right-handed alpha
Helix 6	AA6	A	174	177	Right-handed 310
Helix 7	AA7	A	183	196	Right-handed alpha
Helix 8	AA8	A	197	199	Right-handed 310
Helix 9	AA9	A	204	219	Right-handed alpha
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	254	259	Right-handed alpha
Helix 12	AB3	A	260	264	Right-handed 310
Helix 13	AB4	A	265	269	Right-handed 310
Helix 14	AB5	A	275	286	Right-handed alpha
Helix 15	AB6	A	288	290	Right-handed 310
Helix 16	AB7	A	291	297	Right-handed alpha
Helix 17	AB8	A	303	307	Right-handed 310
Helix 18	AB9	A	310	323	Right-handed alpha
Helix 19	AC1	A	336	338	Right-handed 310
Helix 20	AC2	A	339	351	Right-handed alpha
Helix 21	AC3	A	352	355	Right-handed 310
Helix 22	AC4	A	361	368	Right-handed alpha
Helix 23	AC5	A	369	374	Right-handed 310
Helix 24	AC6	B	57	63	Right-handed alpha
Helix 25	AC7	B	80	94	Right-handed alpha
Helix 26	AC8	B	99	103	Right-handed 310
Helix 27	AC9	B	114	128	Right-handed alpha
Helix 28	AD1	B	139	147	Right-handed alpha
Helix 29	AD2	B	174	177	Right-handed 310
Helix 30	AD3	B	183	196	Right-handed alpha
Helix 31	AD4	B	197	199	Right-handed 310
Helix 32	AD5	B	204	219	Right-handed alpha
Helix 33	AD6	B	224	235	Right-handed alpha
Helix 34	AD7	B	254	262	Right-handed alpha
Helix 35	AD8	B	263	264	Right-handed 310
Helix 36	AD9	B	265	270	Right-handed 310
Helix 37	AE1	B	275	286	Right-handed alpha
Helix 38	AE2	B	288	290	Right-handed 310
Helix 39	AE3	B	291	297	Right-handed alpha
Helix 40	AE4	B	303	307	Right-handed 310
Helix 41	AE5	B	310	323	Right-handed alpha
Helix 42	AE6	B	336	338	Right-handed 310
Helix 43	AE7	B	339	349	Right-handed alpha
Helix 44	AE8	B	350	355	Right-handed 310
Helix 45	AE9	B	361	368	Right-handed alpha
Helix 46	AF1	B	370	375	Right-handed alpha
Helix 47	AF2	C	57	63	Right-handed alpha
Helix 48	AF3	C	80	94	Right-handed alpha
Helix 49	AF4	C	99	103	Right-handed 310
Helix 50	AF5	C	114	128	Right-handed alpha
Helix 51	AF6	C	139	147	Right-handed alpha
Helix 52	AF7	C	174	177	Right-handed 310
Helix 53	AF8	C	183	196	Right-handed alpha
Helix 54	AF9	C	197	199	Right-handed 310
Helix 55	AG1	C	204	219	Right-handed alpha
Helix 56	AG2	C	225	235	Right-handed alpha
Helix 57	AG3	C	254	259	Right-handed alpha
Helix 58	AG4	C	260	264	Right-handed 310
Helix 59	AG5	C	265	269	Right-handed 310
Helix 60	AG6	C	275	286	Right-handed alpha
Helix 61	AG7	C	288	290	Right-handed 310
Helix 62	AG8	C	291	297	Right-handed alpha
Helix 63	AG9	C	303	307	Right-handed 310
Helix 64	AH1	C	310	323	Right-handed alpha
Helix 65	AH2	C	336	338	Right-handed 310
Helix 66	AH3	C	339	350	Right-handed alpha
Helix 67	AH4	C	351	355	Right-handed 310
Helix 68	AH5	C	361	368	Right-handed alpha
Helix 69	AH6	C	369	375	Right-handed 310
Helix 70	AH7	D	57	63	Right-handed alpha
Helix 71	AH8	D	80	94	Right-handed alpha
Helix 72	AH9	D	99	103	Right-handed 310
Helix 73	AI1	D	114	128	Right-handed alpha
Helix 74	AI2	D	139	147	Right-handed alpha
Helix 75	AI3	D	174	177	Right-handed 310
Helix 76	AI4	D	183	196	Right-handed alpha
Helix 77	AI5	D	197	199	Right-handed 310
Helix 78	AI6	D	204	219	Right-handed alpha
Helix 79	AI7	D	224	235	Right-handed alpha
Helix 80	AI8	D	254	259	Right-handed alpha
Helix 81	AI9	D	260	264	Right-handed 310
Helix 82	AJ1	D	265	270	Right-handed 310
Helix 83	AJ2	D	275	286	Right-handed alpha
Helix 84	AJ3	D	288	290	Right-handed 310
Helix 85	AJ4	D	291	297	Right-handed alpha
Helix 86	AJ5	D	303	307	Right-handed 310
Helix 87	AJ6	D	310	323	Right-handed alpha
Helix 88	AJ7	D	336	338	Right-handed 310
Helix 89	AJ8	D	339	349	Right-handed alpha
Helix 90	AJ9	D	350	355	Right-handed 310
Helix 91	AK1	D	361	368	Right-handed alpha
Helix 92	AK2	D	370	376	Right-handed alpha
Helix 93	AK3	E	57	63	Right-handed alpha
Helix 94	AK4	E	80	94	Right-handed alpha
Helix 95	AK5	E	99	103	Right-handed 310
Helix 96	AK6	E	114	128	Right-handed alpha
Helix 97	AK7	E	139	147	Right-handed alpha
Helix 98	AK8	E	174	177	Right-handed 310
Helix 99	AK9	E	183	196	Right-handed alpha
Helix 100	AL1	E	197	199	Right-handed 310
Helix 101	AL2	E	204	219	Right-handed alpha
Helix 102	AL3	E	224	235	Right-handed alpha
Helix 103	AL4	E	254	262	Right-handed alpha
Helix 104	AL5	E	263	264	Right-handed 310
Helix 105	AL6	E	265	269	Right-handed 310
Helix 106	AL7	E	275	286	Right-handed alpha
Helix 107	AL8	E	291	297	Right-handed alpha
Helix 108	AL9	E	303	307	Right-handed 310
Helix 109	AM1	E	310	323	Right-handed alpha
Helix 110	AM2	E	336	338	Right-handed 310
Helix 111	AM3	E	339	351	Right-handed alpha
Helix 112	AM4	E	352	357	Right-handed 310
Helix 113	AM5	E	361	368	Right-handed alpha
Helix 114	AM6	E	370	376	Right-handed alpha

There are 30 sheets in PDB entry 8ORD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	34	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	10	14	anti-parallel
Strand 4	A	105	109	parallel
Strand 5	A	133	138	parallel
Strand 6	A	359	360	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	37	40	anti-parallel
Strand 3	A	67	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	77	78	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	162	168	anti-parallel
Strand 3	A	178	180	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	162	168	anti-parallel
Strand 3	A	152	157	anti-parallel
Strand 4	A	299	302	parallel
Strand 5	A	331	332	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	243	first strand
Strand 2	A	249	252	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	18	23	anti-parallel
Strand 3	B	10	14	anti-parallel
Strand 4	B	105	109	parallel
Strand 5	B	133	138	parallel
Strand 6	B	359	360	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	37	40	anti-parallel
Strand 3	B	67	70	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	74	first strand
Strand 2	B	77	78	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	162	168	anti-parallel
Strand 3	B	178	180	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	172	first strand
Strand 2	B	162	168	anti-parallel
Strand 3	B	151	157	anti-parallel
Strand 4	B	299	302	parallel
Strand 5	B	331	332	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	249	252	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	18	23	anti-parallel
Strand 3	C	10	14	anti-parallel
Strand 4	C	105	109	parallel
Strand 5	C	133	138	parallel
Strand 6	C	359	360	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	37	40	anti-parallel
Strand 3	C	67	70	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	180	first strand
Strand 2	C	162	168	anti-parallel
Strand 3	C	152	157	anti-parallel
Strand 4	C	299	302	parallel
Strand 5	C	331	332	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	180	first strand
Strand 2	C	162	168	anti-parallel
Strand 3	C	171	172	anti-parallel
Strand 4	D	43	44	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	243	first strand
Strand 2	C	249	252	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	10	14	anti-parallel
Strand 4	D	105	109	parallel
Strand 5	D	133	138	parallel
Strand 6	D	359	360	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	37	40	anti-parallel
Strand 3	D	67	70	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	D	77	78	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	162	168	anti-parallel
Strand 3	D	178	180	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	172	first strand
Strand 2	D	162	168	anti-parallel
Strand 3	D	151	157	anti-parallel
Strand 4	D	299	302	parallel
Strand 5	D	331	332	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	243	first strand
Strand 2	D	249	252	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	34	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	10	14	anti-parallel
Strand 4	E	105	109	parallel
Strand 5	E	133	138	parallel
Strand 6	E	359	360	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	37	40	anti-parallel
Strand 3	E	67	70	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	73	74	first strand
Strand 2	E	77	78	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	172	first strand
Strand 2	E	162	168	anti-parallel
Strand 3	E	178	180	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	172	first strand
Strand 2	E	162	168	anti-parallel
Strand 3	E	151	157	anti-parallel
Strand 4	E	299	302	parallel
Strand 5	E	331	332	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	240	243	first strand
Strand 2	E	249	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ORD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ORD