Analysis of interatomic Contacts of Structural Units in PDB entry:
8ORJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ORJ entry

There are 2 chains in PDB entry 8ORJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	GLY 505
B	GLY 11	ASP 500

There are 28 helices in PDB entry 8ORJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	10	Right-handed alpha
Helix 2	AA2	A	39	56	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	112	116	Right-handed 310
Helix 5	AA5	A	133	137	Right-handed alpha
Helix 6	AA6	A	139	151	Right-handed alpha
Helix 7	AA7	A	164	175	Right-handed alpha
Helix 8	AA8	A	175	183	Right-handed alpha
Helix 9	AA9	A	186	192	Right-handed alpha
Helix 10	AB1	A	193	198	Right-handed 310
Helix 11	AB2	A	208	219	Right-handed alpha
Helix 12	AB3	A	239	247	Right-handed alpha
Helix 13	AB4	A	264	284	Right-handed alpha
Helix 14	AB5	A	300	336	Right-handed alpha
Helix 15	AB6	A	415	423	Right-handed alpha
Helix 16	AB7	A	477	488	Right-handed alpha
Helix 17	AB8	B	19	33	Right-handed alpha
Helix 18	AB9	B	133	145	Right-handed alpha
Helix 19	AC1	B	156	166	Right-handed alpha
Helix 20	AC2	B	186	198	Right-handed alpha
Helix 21	AC3	B	238	242	Right-handed 310
Helix 22	AC4	B	269	276	Right-handed alpha
Helix 23	AC5	B	323	328	Right-handed alpha
Helix 24	AC6	B	375	396	Right-handed alpha
Helix 25	AC7	B	402	406	Right-handed 310
Helix 26	AC8	B	467	478	Right-handed alpha
Helix 27	AC9	B	481	490	Right-handed 310
Helix 28	AD1	B	494	499	Right-handed alpha

There are 10 sheets in PDB entry 8ORJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	19	22	anti-parallel
Strand 3	A	34	37	anti-parallel
Strand 4	A	82	89	parallel
Strand 5	A	96	103	anti-parallel
Strand 6	A	366	375	anti-parallel
Strand 7	A	354	363	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	123	132	anti-parallel
Strand 3	A	253	260	anti-parallel
Strand 4	A	228	236	anti-parallel
Strand 5	A	495	503	anti-parallel
Strand 6	A	409	413	anti-parallel
Strand 7	A	398	401	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	379	first strand
Strand 2	A	425	427	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	38	41	parallel
Strand 3	B	13	16	parallel
Strand 4	B	110	112	parallel
Strand 5	B	353	355	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	91	first strand
Strand 2	B	96	99	anti-parallel
Strand 3	B	104	106	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	319	321	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	313	315	parallel
Strand 3	B	150	153	parallel
Strand 4	B	171	174	parallel
Strand 5	B	255	258	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	298	302	anti-parallel
Strand 3	B	307	310	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	360	362	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	414	first strand
Strand 2	B	417	422	anti-parallel
Strand 3	B	456	463	anti-parallel
Strand 4	B	445	451	anti-parallel
Strand 5	B	436	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ORJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ORJ