Analysis of interatomic Contacts of Structural Units in PDB entry:
8ORP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ORP entry

There are 2 chains in PDB entry 8ORP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 1	LEU 476
B	GLN 1	LEU 476

There are 39 helices in PDB entry 8ORP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	31	Right-handed alpha
Helix 2	AA2	A	55	61	Right-handed 310
Helix 3	AA3	A	73	87	Right-handed alpha
Helix 4	AA4	A	127	131	Right-handed 310
Helix 5	AA5	A	142	149	Right-handed alpha
Helix 6	AA6	A	161	178	Right-handed alpha
Helix 7	AA7	A	187	191	Right-handed 310
Helix 8	AA8	A	192	203	Right-handed alpha
Helix 9	AA9	A	207	211	Right-handed 310
Helix 10	AB1	A	233	237	Right-handed 310
Helix 11	AB2	A	245	257	Right-handed alpha
Helix 12	AB3	A	261	268	Right-handed 310
Helix 13	AB4	A	269	273	Right-handed 310
Helix 14	AB5	A	276	278	Right-handed 310
Helix 15	AB6	A	288	292	Right-handed 310
Helix 16	AB7	A	305	319	Right-handed alpha
Helix 17	AB8	A	364	367	Right-handed 310
Helix 18	AB9	A	368	382	Right-handed alpha
Helix 19	AC1	A	473	475	Right-handed 310
Helix 20	AC2	B	20	31	Right-handed alpha
Helix 21	AC3	B	55	61	Right-handed 310
Helix 22	AC4	B	73	87	Right-handed alpha
Helix 23	AC5	B	115	119	Right-handed 310
Helix 24	AC6	B	127	131	Right-handed 310
Helix 25	AC7	B	142	149	Right-handed alpha
Helix 26	AC8	B	161	178	Right-handed alpha
Helix 27	AC9	B	187	191	Right-handed 310
Helix 28	AD1	B	192	203	Right-handed alpha
Helix 29	AD2	B	207	211	Right-handed 310
Helix 30	AD3	B	233	237	Right-handed 310
Helix 31	AD4	B	245	257	Right-handed alpha
Helix 32	AD5	B	261	268	Right-handed 310
Helix 33	AD6	B	269	273	Right-handed 310
Helix 34	AD7	B	276	278	Right-handed 310
Helix 35	AD8	B	288	292	Right-handed 310
Helix 36	AD9	B	305	319	Right-handed alpha
Helix 37	AE1	B	364	367	Right-handed 310
Helix 38	AE2	B	368	382	Right-handed alpha
Helix 39	AE3	B	473	475	Right-handed 310

There are 14 sheets in PDB entry 8ORP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	16	first strand
Strand 2	A	37	42	parallel
Strand 3	A	90	95	parallel
Strand 4	A	182	185	parallel
Strand 5	A	219	222	parallel
Strand 6	A	242	244	parallel
Strand 7	A	280	282	parallel
Strand 8	A	323	328	parallel
Strand 9	A	11	16	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	155	156	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	358	359	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	391	first strand
Strand 2	A	396	401	anti-parallel
Strand 3	A	405	410	anti-parallel
Strand 4	A	467	471	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	421	first strand
Strand 2	A	454	459	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	430	first strand
Strand 2	A	446	449	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	A	441	442	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	16	first strand
Strand 2	B	37	42	parallel
Strand 3	B	90	95	parallel
Strand 4	B	182	185	parallel
Strand 5	B	219	222	parallel
Strand 6	B	242	244	parallel
Strand 7	B	280	282	parallel
Strand 8	B	323	328	parallel
Strand 9	B	11	16	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	155	156	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	358	359	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	391	first strand
Strand 2	B	396	401	anti-parallel
Strand 3	B	405	410	anti-parallel
Strand 4	B	467	471	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	421	first strand
Strand 2	B	454	459	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	427	430	first strand
Strand 2	B	446	449	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	441	442	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ORP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ORP