Analysis of interatomic Contacts of Structural Units in PDB entry:
8OSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OSW entry

There are 4 chains in PDB entry 8OSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -3ALA 241
A
 THR 243ALA 335
B
 GLY -5ALA 241
B
 THR 243SER 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8OSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 48Right-handed 310
Helix 2
AA2
A
49 54Right-handed alpha
Helix 3
AA3
A
54 60Right-handed alpha
Helix 4
AA4
A
61 66Right-handed alpha
Helix 5
AA5
A
69 77Right-handed alpha
Helix 6
AA6
A
83 97Right-handed alpha
Helix 7
AA7
A
100 104Right-handed 310
Helix 8
AA8
A
113 124Right-handed alpha
Helix 9
AA9
A
128 132Right-handed 310
Helix 10
AB1
A
134 148Right-handed alpha
Helix 11
AB2
A
160 175Right-handed alpha
Helix 12
AB3
A
179 181Right-handed 310
Helix 13
AB4
A
197 210Right-handed alpha
Helix 14
AB5
A
214 231Right-handed alpha
Helix 15
AB6
A
232 236Right-handed 310
Helix 16
AB7
A
240 246Right-handed alpha
Helix 17
AB8
A
268 270Right-handed 310
Helix 18
AB9
A
282 296Right-handed alpha
Helix 19
AC1
A
301 312Right-handed alpha
Helix 20
AC2
A
331 334Right-handed 310
Helix 21
AC3
B
45 48Right-handed 310
Helix 22
AC4
B
49 54Right-handed alpha
Helix 23
AC5
B
54 60Right-handed alpha
Helix 24
AC6
B
61 66Right-handed alpha
Helix 25
AC7
B
69 77Right-handed alpha
Helix 26
AC8
B
83 97Right-handed alpha
Helix 27
AC9
B
100 104Right-handed 310
Helix 28
AD1
B
113 124Right-handed alpha
Helix 29
AD2
B
128 132Right-handed 310
Helix 30
AD3
B
134 148Right-handed alpha
Helix 31
AD4
B
160 175Right-handed alpha
Helix 32
AD5
B
179 181Right-handed 310
Helix 33
AD6
B
197 210Right-handed alpha
Helix 34
AD7
B
214 231Right-handed alpha
Helix 35
AD8
B
232 236Right-handed 310
Helix 36
AD9
B
240 246Right-handed alpha
Helix 37
AE1
B
268 270Right-handed 310
Helix 38
AE2
B
282 296Right-handed alpha
Helix 39
AE3
B
301 312Right-handed alpha
Helix 40
AE4
B
331 334Right-handed 310
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There are 8 sheets in PDB entry 8OSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
14 27anti-parallel
Strand 3
A
272 278anti-parallel
Strand 4
A
262 267anti-parallel
Strand 5
A
254 258anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
14 27anti-parallel
Strand 3
A
5 11anti-parallel
Strand 4
A
323 329anti-parallel
Strand 5
A
313 317anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
195 196anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
191 193anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
14 27anti-parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
262 267anti-parallel
Strand 5
B
254 258anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
14 27anti-parallel
Strand 3
B
5 11anti-parallel
Strand 4
B
323 329anti-parallel
Strand 5
B
313 317anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
195 196anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
191 193anti-parallel
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