Analysis of interatomic Contacts of Structural Units in PDB entry:
8OSY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OSY entry

There are 4 chains in PDB entry 8OSY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 383	LEU 627
B	PRO 383	LEU 627
C	PRO 383	LEU 627
D	PRO 383	LEU 627

There are 36 helices in PDB entry 8OSY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	392	397	Right-handed 310
Helix 2	AA2	A	405	422	Right-handed alpha
Helix 3	AA3	A	433	450	Right-handed alpha
Helix 4	AA4	A	457	473	Right-handed alpha
Helix 5	AA5	A	474	476	Right-handed 310
Helix 6	AA6	A	512	516	Right-handed 310
Helix 7	AA7	A	517	534	Right-handed alpha
Helix 8	AA8	A	539	543	Right-handed 310
Helix 9	AA9	A	606	624	Right-handed alpha
Helix 10	AB1	B	392	396	Right-handed 310
Helix 11	AB2	B	405	422	Right-handed alpha
Helix 12	AB3	B	433	450	Right-handed alpha
Helix 13	AB4	B	457	473	Right-handed alpha
Helix 14	AB5	B	474	476	Right-handed 310
Helix 15	AB6	B	512	516	Right-handed 310
Helix 16	AB7	B	517	534	Right-handed alpha
Helix 17	AB8	B	539	543	Right-handed 310
Helix 18	AB9	B	606	624	Right-handed alpha
Helix 19	AC1	C	392	396	Right-handed 310
Helix 20	AC2	C	405	422	Right-handed alpha
Helix 21	AC3	C	433	450	Right-handed alpha
Helix 22	AC4	C	457	473	Right-handed alpha
Helix 23	AC5	C	474	476	Right-handed 310
Helix 24	AC6	C	512	516	Right-handed 310
Helix 25	AC7	C	517	534	Right-handed alpha
Helix 26	AC8	C	539	543	Right-handed 310
Helix 27	AC9	C	606	622	Right-handed alpha
Helix 28	AD1	D	392	396	Right-handed 310
Helix 29	AD2	D	405	422	Right-handed alpha
Helix 30	AD3	D	433	451	Right-handed alpha
Helix 31	AD4	D	457	473	Right-handed alpha
Helix 32	AD5	D	474	476	Right-handed 310
Helix 33	AD6	D	513	516	Right-handed 310
Helix 34	AD7	D	517	534	Right-handed alpha
Helix 35	AD8	D	538	543	Right-handed 310
Helix 36	AD9	D	606	623	Right-handed alpha

There are 15 sheets in PDB entry 8OSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	403	first strand
Strand 2	B	486	490	anti-parallel
Strand 3	B	478	480	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	495	497	anti-parallel
Strand 3	A	548	551	parallel
Strand 4	A	570	574	parallel
Strand 5	A	588	601	anti-parallel
Strand 6	A	578	583	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	495	497	anti-parallel
Strand 3	A	548	551	parallel
Strand 4	A	570	574	parallel
Strand 5	A	588	601	anti-parallel
Strand 6	A	424	432	anti-parallel
Strand 7	C	559	561	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	480	first strand
Strand 2	A	486	490	anti-parallel
Strand 3	C	399	403	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	501	first strand
Strand 2	A	504	506	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	B	424	432	anti-parallel
Strand 3	B	588	601	anti-parallel
Strand 4	B	570	574	anti-parallel
Strand 5	B	547	551	parallel
Strand 6	B	495	497	parallel
Strand 7	B	509	510	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	B	424	432	anti-parallel
Strand 3	B	588	601	anti-parallel
Strand 4	B	578	583	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	403	first strand
Strand 2	C	486	490	anti-parallel
Strand 3	C	478	480	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	501	first strand
Strand 2	B	504	506	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	561	first strand
Strand 2	C	424	432	anti-parallel
Strand 3	C	588	601	anti-parallel
Strand 4	C	570	574	anti-parallel
Strand 5	C	547	551	parallel
Strand 6	C	495	497	parallel
Strand 7	C	509	510	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	561	first strand
Strand 2	C	424	432	anti-parallel
Strand 3	C	588	601	anti-parallel
Strand 4	C	578	583	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	432	first strand
Strand 2	D	588	601	anti-parallel
Strand 3	D	570	574	anti-parallel
Strand 4	D	547	551	parallel
Strand 5	D	494	497	parallel
Strand 6	D	509	511	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	432	first strand
Strand 2	D	588	601	anti-parallel
Strand 3	D	578	583	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	478	480	first strand
Strand 2	D	487	489	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	499	501	first strand
Strand 2	D	504	506	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OSY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OSY