Analysis of interatomic Contacts of Structural Units in PDB entry:
8OT3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OT3 entry

There are 12 chains in PDB entry 8OT3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 13VAL 40
B
 HIS 13VAL 40
C
 HIS 13VAL 40
D
 HIS 13VAL 40
E
 HIS 13VAL 40
F
 HIS 13VAL 40
G
 HIS 13VAL 40
H
 HIS 13VAL 40
I
 HIS 13VAL 40
J
 HIS 13VAL 40
K
 HIS 13VAL 40
L
 HIS 13VAL 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8OT3

There are 6 sheets in PDB entry 8OT3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 19first strand
Strand 2
C
16 19parallel
Strand 3
E
16 19parallel
Strand 4
G
16 19parallel
Strand 5
I
16 19parallel
Strand 6
K
16 19parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
C
22 24parallel
Strand 3
E
22 24parallel
Strand 4
G
22 24parallel
Strand 5
I
22 24parallel
Strand 6
K
22 24parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
C
30 32parallel
Strand 3
E
30 32parallel
Strand 4
G
30 32parallel
Strand 5
I
30 32parallel
Strand 6
K
30 32parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 19first strand
Strand 2
D
16 19parallel
Strand 3
F
16 19parallel
Strand 4
H
16 19parallel
Strand 5
J
16 19parallel
Strand 6
L
16 19parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
D
22 24parallel
Strand 3
F
22 24parallel
Strand 4
H
22 24parallel
Strand 5
J
22 24parallel
Strand 6
L
22 24parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 32first strand
Strand 2
D
30 32parallel
Strand 3
F
30 32parallel
Strand 4
H
30 32parallel
Strand 5
J
30 32parallel
Strand 6
L
30 32parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il