Analysis of interatomic Contacts of Structural Units in PDB entry:
8OT8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OT8 entry

There are 4 chains in PDB entry 8OT8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 5	ASP 426
B	SER 5	ASP 426
C	SER 5	ASP 426
D	ASN 7	ASP 426

There are 64 helices in PDB entry 8OT8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	35	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	83	94	Right-handed alpha
Helix 4	AA4	A	108	115	Right-handed alpha
Helix 5	AA5	A	126	129	Right-handed 310
Helix 6	AA6	A	154	158	Right-handed 310
Helix 7	AA7	A	192	203	Right-handed alpha
Helix 8	AA8	A	240	245	Right-handed alpha
Helix 9	AA9	A	261	265	Right-handed 310
Helix 10	AB1	A	276	278	Right-handed 310
Helix 11	AB2	A	304	314	Right-handed alpha
Helix 12	AB3	A	315	320	Right-handed alpha
Helix 13	AB4	A	356	372	Right-handed alpha
Helix 14	AB5	A	373	375	Right-handed 310
Helix 15	AB6	A	387	394	Right-handed alpha
Helix 16	AB7	A	397	409	Right-handed alpha
Helix 17	AB8	A	416	423	Right-handed alpha
Helix 18	AB9	B	24	35	Right-handed alpha
Helix 19	AC1	B	83	94	Right-handed alpha
Helix 20	AC2	B	108	114	Right-handed alpha
Helix 21	AC3	B	126	129	Right-handed 310
Helix 22	AC4	B	154	158	Right-handed 310
Helix 23	AC5	B	192	203	Right-handed alpha
Helix 24	AC6	B	241	245	Right-handed alpha
Helix 25	AC7	B	261	265	Right-handed 310
Helix 26	AC8	B	276	278	Right-handed 310
Helix 27	AC9	B	304	314	Right-handed alpha
Helix 28	AD1	B	315	320	Right-handed alpha
Helix 29	AD2	B	356	372	Right-handed alpha
Helix 30	AD3	B	373	375	Right-handed 310
Helix 31	AD4	B	387	394	Right-handed alpha
Helix 32	AD5	B	397	409	Right-handed alpha
Helix 33	AD6	B	416	423	Right-handed alpha
Helix 34	AD7	C	24	35	Right-handed alpha
Helix 35	AD8	C	83	94	Right-handed alpha
Helix 36	AD9	C	108	115	Right-handed alpha
Helix 37	AE1	C	126	129	Right-handed 310
Helix 38	AE2	C	154	159	Right-handed alpha
Helix 39	AE3	C	193	203	Right-handed alpha
Helix 40	AE4	C	241	245	Right-handed alpha
Helix 41	AE5	C	261	265	Right-handed 310
Helix 42	AE6	C	276	278	Right-handed 310
Helix 43	AE7	C	304	314	Right-handed alpha
Helix 44	AE8	C	315	320	Right-handed alpha
Helix 45	AE9	C	356	371	Right-handed alpha
Helix 46	AF1	C	372	375	Right-handed 310
Helix 47	AF2	C	387	394	Right-handed alpha
Helix 48	AF3	C	397	409	Right-handed alpha
Helix 49	AF4	C	416	423	Right-handed alpha
Helix 50	AF5	D	24	35	Right-handed alpha
Helix 51	AF6	D	83	94	Right-handed alpha
Helix 52	AF7	D	108	115	Right-handed alpha
Helix 53	AF8	D	126	129	Right-handed 310
Helix 54	AF9	D	154	159	Right-handed alpha
Helix 55	AG1	D	192	203	Right-handed alpha
Helix 56	AG2	D	261	265	Right-handed 310
Helix 57	AG3	D	276	278	Right-handed 310
Helix 58	AG4	D	304	314	Right-handed alpha
Helix 59	AG5	D	315	320	Right-handed alpha
Helix 60	AG6	D	356	372	Right-handed alpha
Helix 61	AG7	D	373	375	Right-handed 310
Helix 62	AG8	D	387	394	Right-handed alpha
Helix 63	AG9	D	397	409	Right-handed alpha
Helix 64	AH1	D	416	423	Right-handed alpha

There are 19 sheets in PDB entry 8OT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	56	59	parallel
Strand 3	A	38	41	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	75	79	anti-parallel
Strand 3	A	167	174	anti-parallel
Strand 4	A	131	137	anti-parallel
Strand 5	A	143	147	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	176	177	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	180	190	anti-parallel
Strand 3	A	273	274	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	180	190	anti-parallel
Strand 3	A	218	227	anti-parallel
Strand 4	A	207	212	anti-parallel
Strand 5	A	323	331	anti-parallel
Strand 6	A	346	353	anti-parallel
Strand 7	A	294	301	anti-parallel
Strand 8	A	377	378	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	56	59	parallel
Strand 3	B	38	41	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	75	79	anti-parallel
Strand 3	B	167	174	anti-parallel
Strand 4	B	131	137	anti-parallel
Strand 5	B	143	147	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	176	177	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	180	190	anti-parallel
Strand 3	B	273	274	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	180	190	anti-parallel
Strand 3	B	218	227	anti-parallel
Strand 4	B	207	212	anti-parallel
Strand 5	B	323	331	anti-parallel
Strand 6	B	346	353	anti-parallel
Strand 7	B	294	301	anti-parallel
Strand 8	B	377	378	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	56	58	parallel
Strand 3	C	38	40	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	75	79	anti-parallel
Strand 3	C	167	174	anti-parallel
Strand 4	C	131	137	anti-parallel
Strand 5	C	143	147	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	176	177	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	274	first strand
Strand 2	C	180	190	anti-parallel
Strand 3	C	218	227	anti-parallel
Strand 4	C	207	212	anti-parallel
Strand 5	C	323	331	anti-parallel
Strand 6	C	346	353	anti-parallel
Strand 7	C	294	301	anti-parallel
Strand 8	C	377	378	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	56	59	parallel
Strand 3	D	38	41	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	70	first strand
Strand 2	D	75	79	anti-parallel
Strand 3	D	167	174	anti-parallel
Strand 4	D	131	137	anti-parallel
Strand 5	D	143	147	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	97	first strand
Strand 2	D	176	177	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	180	190	anti-parallel
Strand 3	D	273	274	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	180	190	anti-parallel
Strand 3	D	218	227	anti-parallel
Strand 4	D	207	212	anti-parallel
Strand 5	D	323	331	anti-parallel
Strand 6	D	346	353	anti-parallel
Strand 7	D	294	301	anti-parallel
Strand 8	D	377	378	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OT8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OT8