Analysis of interatomic Contacts of Structural Units in PDB entry:
8OTU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OTU entry

There are 2 chains in PDB entry 8OTU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 42PHE 305
B
 GLY 42ASP 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8OTU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 56Right-handed alpha
Helix 2
AA2
A
102 107Right-handed 310
Helix 3
AA3
A
108 115Right-handed alpha
Helix 4
AA4
A
131 151Right-handed alpha
Helix 5
AA5
A
172 184Right-handed alpha
Helix 6
AA6
A
200 204Right-handed 310
Helix 7
AA7
A
226 234Right-handed alpha
Helix 8
AA8
A
251 255Right-handed 310
Helix 9
AA9
A
259 276Right-handed alpha
Helix 10
AB1
A
278 280Right-handed 310
Helix 11
AB2
A
281 286Right-handed alpha
Helix 12
AB3
A
289 293Right-handed 310
Helix 13
AB4
B
50 56Right-handed alpha
Helix 14
AB5
B
102 107Right-handed 310
Helix 15
AB6
B
108 115Right-handed alpha
Helix 16
AB7
B
131 151Right-handed alpha
Helix 17
AB8
B
172 184Right-handed alpha
Helix 18
AB9
B
200 204Right-handed 310
Helix 19
AC1
B
226 234Right-handed alpha
Helix 20
AC2
B
251 255Right-handed 310
Helix 21
AC3
B
259 276Right-handed alpha
Helix 22
AC4
B
278 285Right-handed 310
Helix 23
AC5
B
289 293Right-handed 310
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There are 2 sheets in PDB entry 8OTU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
119 123anti-parallel
Strand 4
A
90 96parallel
Strand 5
A
161 171parallel
Strand 6
A
189 193parallel
Strand 7
A
210 215parallel
Strand 8
A
240 245parallel
Strand 9
A
296 301anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
119 123anti-parallel
Strand 4
B
90 96parallel
Strand 5
B
161 171parallel
Strand 6
B
189 193parallel
Strand 7
B
210 215parallel
Strand 8
B
240 245parallel
Strand 9
B
296 301anti-parallel
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