Analysis of interatomic Contacts of Structural Units in PDB entry:
8OTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OTV entry

There are 2 chains in PDB entry 8OTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 219
B
 MET 1ASP 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8OTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 74Right-handed alpha
Helix 2
AA2
A
94 97Right-handed 310
Helix 3
AA3
A
114 128Right-handed alpha
Helix 4
AA4
A
132 136Right-handed 310
Helix 5
AA5
A
161 165Right-handed 310
Helix 6
AA6
A
188 195Right-handed alpha
Helix 7
AA7
A
201 215Right-handed alpha
Helix 8
AA8
A
216 219Right-handed 310
Helix 9
AA9
B
62 72Right-handed alpha
Helix 10
AB1
B
94 97Right-handed 310
Helix 11
AB2
B
114 128Right-handed alpha
Helix 12
AB3
B
132 136Right-handed 310
Helix 13
AB4
B
161 165Right-handed 310
Helix 14
AB5
B
188 195Right-handed alpha
Helix 15
AB6
B
201 215Right-handed alpha
Helix 16
AB7
B
216 219Right-handed 310
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There are 6 sheets in PDB entry 8OTV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
5 11anti-parallel
Strand 3
B
19 26anti-parallel
Strand 4
B
31 38anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 37first strand
Strand 2
A
20 27anti-parallel
Strand 3
B
4 11anti-parallel
Strand 4
B
87 88anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
151 160parallel
Strand 5
A
137 144anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
54 61anti-parallel
Strand 4
A
179 185anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 102first strand
Strand 2
B
54 61anti-parallel
Strand 3
B
42 49anti-parallel
Strand 4
B
152 160parallel
Strand 5
B
137 143anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
54 61anti-parallel
Strand 4
B
180 185anti-parallel
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