Analysis of interatomic Contacts of Structural Units in PDB entry:
8OU8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OU8 entry

There are 2 chains in PDB entry 8OU8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ASP 2	GLU 400
A	ASP 2	GLU 401

There are 33 helices in PDB entry 8OU8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	2	10	Right-handed alpha
Helix 2	AA2	D	26	47	Right-handed alpha
Helix 3	AA3	D	60	66	Right-handed alpha
Helix 4	AA4	D	67	72	Right-handed alpha
Helix 5	AA5	D	73	76	Right-handed 310
Helix 6	AA6	D	92	102	Right-handed alpha
Helix 7	AA7	D	106	110	Right-handed 310
Helix 8	AA8	D	125	129	Right-handed 310
Helix 9	AA9	D	151	169	Right-handed alpha
Helix 10	AB1	D	189	207	Right-handed alpha
Helix 11	AB2	D	247	252	Right-handed alpha
Helix 12	AB3	D	277	288	Right-handed alpha
Helix 13	AB4	D	293	297	Right-handed 310
Helix 14	AB5	D	307	309	Right-handed 310
Helix 15	AB6	D	310	324	Right-handed alpha
Helix 16	AB7	D	336	347	Right-handed alpha
Helix 17	AB8	D	356	363	Right-handed alpha
Helix 18	AB9	D	380	393	Right-handed alpha
Helix 19	AC1	A	3	10	Right-handed alpha
Helix 20	AC2	A	26	47	Right-handed alpha
Helix 21	AC3	A	60	66	Right-handed alpha
Helix 22	AC4	A	67	72	Right-handed alpha
Helix 23	AC5	A	92	101	Right-handed alpha
Helix 24	AC6	A	125	129	Right-handed 310
Helix 25	AC7	A	151	170	Right-handed alpha
Helix 26	AC8	A	189	207	Right-handed alpha
Helix 27	AC9	A	247	252	Right-handed alpha
Helix 28	AD1	A	277	289	Right-handed alpha
Helix 29	AD2	A	307	309	Right-handed 310
Helix 30	AD3	A	310	324	Right-handed alpha
Helix 31	AD4	A	336	347	Right-handed alpha
Helix 32	AD5	A	356	363	Right-handed alpha
Helix 33	AD6	A	380	393	Right-handed alpha

There are 10 sheets in PDB entry 8OU8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	16	first strand
Strand 2	D	19	25	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	112	121	parallel
Strand 3	D	137	147	anti-parallel
Strand 4	D	267	276	anti-parallel
Strand 5	D	236	245	anti-parallel
Strand 6	D	224	230	anti-parallel
Strand 7	D	176	180	anti-parallel
Strand 8	D	211	214	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	59	first strand
Strand 2	D	84	88	anti-parallel
Strand 3	D	77	81	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	257	first strand
Strand 2	D	263	264	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	331	first strand
Strand 2	D	301	305	parallel
Strand 3	D	351	355	parallel
Strand 4	D	364	369	anti-parallel
Strand 5	D	374	379	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	24	25	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	112	121	parallel
Strand 3	A	137	147	anti-parallel
Strand 4	A	267	276	anti-parallel
Strand 5	A	236	245	anti-parallel
Strand 6	A	224	230	anti-parallel
Strand 7	A	176	180	anti-parallel
Strand 8	A	211	214	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	84	88	anti-parallel
Strand 3	A	78	81	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	257	first strand
Strand 2	A	263	264	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	331	first strand
Strand 2	A	301	305	parallel
Strand 3	A	351	355	parallel
Strand 4	A	364	369	anti-parallel
Strand 5	A	374	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OU8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OU8