Analysis of interatomic Contacts of Structural Units in PDB entry:
8OUD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OUD entry

There are 6 chains in PDB entry 8OUD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 49	THR 489
B	LEU 49	THR 489
C	LEU 49	THR 489
D	GLN 1	SER 115
E	GLN 1	SER 115
F	GLN 1	SER 115

There are 61 helices in PDB entry 8OUD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	75	Right-handed alpha
Helix 2	AA2	A	76	118	Right-handed alpha
Helix 3	AA3	A	120	154	Right-handed alpha
Helix 4	AA4	A	179	192	Right-handed alpha
Helix 5	AA5	A	195	200	Right-handed alpha
Helix 6	AA6	A	230	249	Right-handed alpha
Helix 7	AA7	A	252	292	Right-handed alpha
Helix 8	AA8	A	294	319	Right-handed alpha
Helix 9	AA9	A	319	330	Right-handed alpha
Helix 10	AB1	A	332	340	Right-handed alpha
Helix 11	AB2	A	340	351	Right-handed alpha
Helix 12	AB3	A	356	369	Right-handed alpha
Helix 13	AB4	A	371	386	Right-handed alpha
Helix 14	AB5	A	387	405	Right-handed alpha
Helix 15	AB6	A	410	428	Right-handed alpha
Helix 16	AB7	A	435	446	Right-handed alpha
Helix 17	AB8	A	449	451	Right-handed 310
Helix 18	AB9	A	452	457	Right-handed alpha
Helix 19	AC1	A	459	489	Right-handed alpha
Helix 20	AC2	B	52	75	Right-handed alpha
Helix 21	AC3	B	77	82	Right-handed alpha
Helix 22	AC4	B	82	90	Right-handed alpha
Helix 23	AC5	B	90	118	Right-handed alpha
Helix 24	AC6	B	120	153	Right-handed alpha
Helix 25	AC7	B	179	192	Right-handed alpha
Helix 26	AC8	B	195	200	Right-handed alpha
Helix 27	AC9	B	230	249	Right-handed alpha
Helix 28	AD1	B	252	292	Right-handed alpha
Helix 29	AD2	B	294	319	Right-handed alpha
Helix 30	AD3	B	319	330	Right-handed alpha
Helix 31	AD4	B	332	339	Right-handed alpha
Helix 32	AD5	B	340	351	Right-handed alpha
Helix 33	AD6	B	352	367	Right-handed alpha
Helix 34	AD7	B	371	386	Right-handed alpha
Helix 35	AD8	B	387	405	Right-handed alpha
Helix 36	AD9	B	410	428	Right-handed alpha
Helix 37	AE1	B	435	446	Right-handed alpha
Helix 38	AE2	B	452	457	Right-handed alpha
Helix 39	AE3	B	459	489	Right-handed alpha
Helix 40	AE4	C	52	75	Right-handed alpha
Helix 41	AE5	C	77	90	Right-handed alpha
Helix 42	AE6	C	90	118	Right-handed alpha
Helix 43	AE7	C	120	154	Right-handed alpha
Helix 44	AE8	C	179	192	Right-handed alpha
Helix 45	AE9	C	195	200	Right-handed alpha
Helix 46	AF1	C	230	249	Right-handed alpha
Helix 47	AF2	C	252	292	Right-handed alpha
Helix 48	AF3	C	294	319	Right-handed alpha
Helix 49	AF4	C	319	330	Right-handed alpha
Helix 50	AF5	C	332	340	Right-handed alpha
Helix 51	AF6	C	340	351	Right-handed alpha
Helix 52	AF7	C	352	367	Right-handed alpha
Helix 53	AF8	C	371	386	Right-handed alpha
Helix 54	AF9	C	387	405	Right-handed alpha
Helix 55	AG1	C	410	428	Right-handed alpha
Helix 56	AG2	C	435	446	Right-handed alpha
Helix 57	AG3	C	452	457	Right-handed alpha
Helix 58	AG4	C	459	488	Right-handed alpha
Helix 59	AG5	D	86	90	Right-handed 310
Helix 60	AG6	E	86	90	Right-handed 310
Helix 61	AG7	F	86	90	Right-handed 310

There are 12 sheets in PDB entry 8OUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	209	first strand
Strand 2	A	220	227	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	209	first strand
Strand 2	B	220	227	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	209	first strand
Strand 2	C	220	227	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	7	first strand
Strand 2	D	18	26	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	110	114	parallel
Strand 3	D	91	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	52	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	110	114	parallel
Strand 3	D	91	99	anti-parallel
Strand 4	D	103	106	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	7	first strand
Strand 2	E	18	26	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	110	114	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	110	114	parallel
Strand 3	E	91	99	anti-parallel
Strand 4	E	103	106	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	18	26	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	110	114	parallel
Strand 3	F	91	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	52	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	110	114	parallel
Strand 3	F	91	99	anti-parallel
Strand 4	F	103	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OUD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OUD