Analysis of interatomic Contacts of Structural Units in PDB entry:
8OUI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OUI entry

There are 4 chains in PDB entry 8OUI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 43LYS 488
B
 ASP 43LYS 488
C
 ASP 43LYS 488
D
 ALA 40SER 140
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 8OUI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 52Right-handed alpha
Helix 2
AA2
A
52 75Right-handed alpha
Helix 3
AA3
A
82 118Right-handed alpha
Helix 4
AA4
A
119 124Right-handed alpha
Helix 5
AA5
A
125 154Right-handed alpha
Helix 6
AA6
A
179 192Right-handed alpha
Helix 7
AA7
A
197 201Right-handed 310
Helix 8
AA8
A
230 248Right-handed alpha
Helix 9
AA9
A
249 292Right-handed alpha
Helix 10
AB1
A
294 319Right-handed alpha
Helix 11
AB2
A
319 328Right-handed alpha
Helix 12
AB3
A
332 340Right-handed alpha
Helix 13
AB4
A
340 351Right-handed alpha
Helix 14
AB5
A
356 367Right-handed alpha
Helix 15
AB6
A
372 383Right-handed alpha
Helix 16
AB7
A
387 405Right-handed alpha
Helix 17
AB8
A
410 427Right-handed alpha
Helix 18
AB9
A
435 447Right-handed alpha
Helix 19
AC1
A
452 464Right-handed alpha
Helix 20
AC2
A
464 488Right-handed alpha
Helix 21
AC3
B
44 52Right-handed alpha
Helix 22
AC4
B
52 76Right-handed alpha
Helix 23
AC5
B
77 81Right-handed 310
Helix 24
AC6
B
82 119Right-handed alpha
Helix 25
AC7
B
120 124Right-handed 310
Helix 26
AC8
B
127 154Right-handed alpha
Helix 27
AC9
B
179 192Right-handed alpha
Helix 28
AD1
B
195 200Right-handed alpha
Helix 29
AD2
B
230 249Right-handed alpha
Helix 30
AD3
B
252 292Right-handed alpha
Helix 31
AD4
B
294 329Right-handed alpha
Helix 32
AD5
B
332 339Right-handed alpha
Helix 33
AD6
B
340 350Right-handed alpha
Helix 34
AD7
B
353 355Right-handed 310
Helix 35
AD8
B
356 368Right-handed alpha
Helix 36
AD9
B
371 383Right-handed alpha
Helix 37
AE1
B
387 405Right-handed alpha
Helix 38
AE2
B
410 427Right-handed alpha
Helix 39
AE3
B
434 447Right-handed alpha
Helix 40
AE4
B
452 459Right-handed alpha
Helix 41
AE5
B
459 488Right-handed alpha
Helix 42
AE6
C
45 52Right-handed alpha
Helix 43
AE7
C
52 75Right-handed alpha
Helix 44
AE8
C
78 81Right-handed 310
Helix 45
AE9
C
82 117Right-handed alpha
Helix 46
AF1
C
125 154Right-handed alpha
Helix 47
AF2
C
179 192Right-handed alpha
Helix 48
AF3
C
195 200Right-handed alpha
Helix 49
AF4
C
230 249Right-handed alpha
Helix 50
AF5
C
249 292Right-handed alpha
Helix 51
AF6
C
295 326Right-handed alpha
Helix 52
AF7
C
332 339Right-handed alpha
Helix 53
AF8
C
341 350Right-handed alpha
Helix 54
AF9
C
356 368Right-handed alpha
Helix 55
AG1
C
371 385Right-handed alpha
Helix 56
AG2
C
387 405Right-handed alpha
Helix 57
AG3
C
410 425Right-handed alpha
Helix 58
AG4
C
435 446Right-handed alpha
Helix 59
AG5
C
452 459Right-handed alpha
Helix 60
AG6
C
462 488Right-handed alpha
Helix 61
AG7
D
68 72Right-handed 310
Helix 62
AG8
D
123 140Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8OUI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 221first strand
Strand 2
A
208 213anti-parallel
Strand 3
D
58 63anti-parallel
Strand 4
D
48 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 203first strand
Strand 2
B
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 208first strand
Strand 2
B
221 223anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 221first strand
Strand 2
C
208 211anti-parallel
Strand 3
D
75 81parallel
Strand 4
D
84 90anti-parallel
Strand 5
D
109 113anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 98first strand
Strand 2
D
101 102anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il