Analysis of interatomic Contacts of Structural Units in PDB entry:
8OUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OUM entry

There are 5 chains in PDB entry 8OUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 13LYS 180
B
 MET 12HIS 184
C
 LYS 13LEU 182
D
 LYS 13LYS 180
E
 MET 12HIS 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8OUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 38Right-handed alpha
Helix 2
AA2
A
69 74Right-handed 310
Helix 3
AA3
A
75 80Right-handed alpha
Helix 4
AA4
A
97 110Right-handed alpha
Helix 5
AA5
A
133 141Right-handed alpha
Helix 6
AA6
A
166 180Right-handed alpha
Helix 7
AA7
B
27 38Right-handed alpha
Helix 8
AA8
B
72 74Right-handed 310
Helix 9
AA9
B
75 80Right-handed alpha
Helix 10
AB1
B
97 110Right-handed alpha
Helix 11
AB2
B
133 141Right-handed alpha
Helix 12
AB3
B
166 184Right-handed alpha
Helix 13
AB4
C
27 38Right-handed alpha
Helix 14
AB5
C
72 74Right-handed 310
Helix 15
AB6
C
75 80Right-handed alpha
Helix 16
AB7
C
94 96Right-handed 310
Helix 17
AB8
C
97 110Right-handed alpha
Helix 18
AB9
C
133 141Right-handed alpha
Helix 19
AC1
C
166 182Right-handed alpha
Helix 20
AC2
D
27 38Right-handed alpha
Helix 21
AC3
D
69 74Right-handed 310
Helix 22
AC4
D
75 80Right-handed alpha
Helix 23
AC5
D
94 96Right-handed 310
Helix 24
AC6
D
97 110Right-handed alpha
Helix 25
AC7
D
133 141Right-handed alpha
Helix 26
AC8
D
166 180Right-handed alpha
Helix 27
AC9
E
27 38Right-handed alpha
Helix 28
AD1
E
72 74Right-handed 310
Helix 29
AD2
E
75 80Right-handed alpha
Helix 30
AD3
E
97 110Right-handed alpha
Helix 31
AD4
E
133 141Right-handed alpha
Helix 32
AD5
E
166 185Right-handed alpha
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There are 2 sheets in PDB entry 8OUM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
119 124parallel
Strand 3
A
83 91parallel
Strand 4
A
16 21parallel
Strand 5
A
60 66parallel
Strand 6
A
48 55anti-parallel
Strand 7
B
154 158anti-parallel
Strand 8
B
119 124parallel
Strand 9
B
83 91parallel
Strand 10
B
14 21parallel
Strand 11
B
59 66parallel
Strand 12
B
48 55anti-parallel
Strand 13
E
154 158anti-parallel
Strand 14
E
119 124parallel
Strand 15
E
83 91parallel
Strand 16
E
15 21parallel
Strand 17
E
60 66parallel
Strand 18
E
49 55anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 158first strand
Strand 2
C
119 124parallel
Strand 3
C
83 91parallel
Strand 4
C
15 21parallel
Strand 5
C
60 66parallel
Strand 6
C
48 54anti-parallel
Strand 7
D
154 158anti-parallel
Strand 8
D
119 124parallel
Strand 9
D
83 91parallel
Strand 10
D
15 21parallel
Strand 11
D
60 66parallel
Strand 12
D
49 54anti-parallel
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