Analysis of interatomic Contacts of Structural Units in PDB entry:
8OUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OUP entry

There are 4 chains in PDB entry 8OUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLN 157
B
 THR 8LYS 158
C
 THR 8LYS 158
D
 THR 8LYS 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 8OUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 44Right-handed alpha
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
50 55Right-handed 310
Helix 4
AA4
A
58 65Right-handed alpha
Helix 5
AA5
A
65 85Right-handed alpha
Helix 6
AA6
A
88 106Right-handed alpha
Helix 7
AA7
A
109 129Right-handed alpha
Helix 8
AA8
A
131 157Right-handed alpha
Helix 9
AA9
B
11 44Right-handed alpha
Helix 10
AB1
B
44 50Right-handed alpha
Helix 11
AB2
B
51 55Right-handed 310
Helix 12
AB3
B
58 65Right-handed alpha
Helix 13
AB4
B
65 85Right-handed alpha
Helix 14
AB5
B
88 105Right-handed alpha
Helix 15
AB6
B
109 129Right-handed alpha
Helix 16
AB7
B
131 156Right-handed alpha
Helix 17
AB8
C
11 44Right-handed alpha
Helix 18
AB9
C
44 49Right-handed alpha
Helix 19
AC1
C
50 55Right-handed 310
Helix 20
AC2
C
58 64Right-handed alpha
Helix 21
AC3
C
65 85Right-handed alpha
Helix 22
AC4
C
88 106Right-handed alpha
Helix 23
AC5
C
109 129Right-handed alpha
Helix 24
AC6
C
131 158Right-handed alpha
Helix 25
AC7
D
11 44Right-handed alpha
Helix 26
AC8
D
44 50Right-handed alpha
Helix 27
AC9
D
51 55Right-handed 310
Helix 28
AD1
D
58 65Right-handed alpha
Helix 29
AD2
D
65 85Right-handed alpha
Helix 30
AD3
D
88 105Right-handed alpha
Helix 31
AD4
D
109 129Right-handed alpha
Helix 32
AD5
D
131 158Right-handed alpha
Back to top of page
There are no sheets in PDB entry 8OUP
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il