Analysis of interatomic Contacts of Structural Units in PDB entry:
8OV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OV6 entry

There are 3 chains in PDB entry 8OV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	HIS 1140
B	ASN 45	LEU 216
C	THR 60	PRO 458

There are 32 helices in PDB entry 8OV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	250	256	Right-handed 310
Helix 2	AA2	A	381	385	Right-handed 310
Helix 3	AA3	A	755	759	Right-handed 310
Helix 4	AA4	A	986	990	Right-handed 310
Helix 5	AA5	A	1044	1059	Right-handed alpha
Helix 6	AA6	A	1069	1074	Right-handed alpha
Helix 7	AA7	A	1091	1096	Right-handed alpha
Helix 8	AA8	A	1097	1099	Right-handed 310
Helix 9	AA9	A	1101	1110	Right-handed alpha
Helix 10	AB1	A	1125	1138	Right-handed alpha
Helix 11	AB2	B	47	62	Right-handed alpha
Helix 12	AB3	B	73	77	Right-handed 310
Helix 13	AB4	B	87	95	Right-handed alpha
Helix 14	AB5	B	115	120	Right-handed alpha
Helix 15	AB6	B	130	139	Right-handed alpha
Helix 16	AB7	B	142	157	Right-handed alpha
Helix 17	AB8	B	178	191	Right-handed alpha
Helix 18	AB9	B	200	216	Right-handed alpha
Helix 19	AC1	C	61	69	Right-handed alpha
Helix 20	AC2	C	69	77	Right-handed alpha
Helix 21	AC3	C	80	84	Right-handed 310
Helix 22	AC4	C	88	93	Right-handed alpha
Helix 23	AC5	C	96	101	Right-handed alpha
Helix 24	AC6	C	106	116	Right-handed alpha
Helix 25	AC7	C	122	140	Right-handed alpha
Helix 26	AC8	C	144	162	Right-handed alpha
Helix 27	AC9	C	350	365	Right-handed alpha
Helix 28	AD1	C	373	377	Right-handed 310
Helix 29	AD2	C	389	394	Right-handed alpha
Helix 30	AD3	C	399	409	Right-handed alpha
Helix 31	AD4	C	414	433	Right-handed alpha
Helix 32	AD5	C	437	455	Right-handed alpha

There are 19 sheets in PDB entry 8OV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1008	first strand
Strand 2	A	1025	1032	anti-parallel
Strand 3	A	1037	1042	anti-parallel
Strand 4	A	4	10	anti-parallel
Strand 5	A	1088	1090	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	30	35	anti-parallel
Strand 3	A	38	44	anti-parallel
Strand 4	A	49	56	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	67	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	85	94	anti-parallel
Strand 4	A	97	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	130	136	anti-parallel
Strand 3	A	139	144	anti-parallel
Strand 4	A	155	158	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	177	184	anti-parallel
Strand 3	A	187	196	anti-parallel
Strand 4	A	201	204	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	177	184	anti-parallel
Strand 3	A	187	196	anti-parallel
Strand 4	A	210	211	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	237	241	anti-parallel
Strand 4	A	244	248	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	279	289	anti-parallel
Strand 4	A	295	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	318	first strand
Strand 2	A	321	325	anti-parallel
Strand 3	A	331	336	anti-parallel
Strand 4	A	347	353	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	365	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	386	391	anti-parallel
Strand 4	A	711	712	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	727	first strand
Strand 2	A	732	742	anti-parallel
Strand 3	A	750	751	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	727	first strand
Strand 2	A	732	742	anti-parallel
Strand 3	A	785	795	anti-parallel
Strand 4	A	801	806	anti-parallel
Strand 5	A	762	765	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	812	819	first strand
Strand 2	A	828	834	anti-parallel
Strand 3	A	846	854	anti-parallel
Strand 4	A	857	866	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	874	876	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	887	893	anti-parallel
Strand 4	A	899	903	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	911	913	first strand
Strand 2	A	920	925	anti-parallel
Strand 3	A	916	917	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	911	913	first strand
Strand 2	A	920	925	anti-parallel
Strand 3	A	930	935	anti-parallel
Strand 4	A	942	947	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	959	first strand
Strand 2	A	964	969	anti-parallel
Strand 3	A	973	979	anti-parallel
Strand 4	A	992	998	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1076	1077	first strand
Strand 2	A	1082	1083	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	99	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OV6