Analysis of interatomic Contacts of Structural Units in PDB entry:
8OV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OV8 entry

There are 2 chains in PDB entry 8OV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2HIS 350
B
 PRO 3HIS 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 8OV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 61Right-handed 310
Helix 2
AA2
A
129 135Right-handed 310
Helix 3
AA3
A
138 152Right-handed alpha
Helix 4
AA4
A
167 180Right-handed alpha
Helix 5
AA5
A
190 200Right-handed alpha
Helix 6
AA6
A
212 221Right-handed alpha
Helix 7
AA7
A
231 241Right-handed alpha
Helix 8
AA8
A
253 257Right-handed 310
Helix 9
AA9
A
268 273Right-handed alpha
Helix 10
AB1
A
281 303Right-handed alpha
Helix 11
AB2
A
318 328Right-handed alpha
Helix 12
AB3
B
54 61Right-handed 310
Helix 13
AB4
B
129 135Right-handed 310
Helix 14
AB5
B
138 152Right-handed alpha
Helix 15
AB6
B
167 180Right-handed alpha
Helix 16
AB7
B
190 200Right-handed alpha
Helix 17
AB8
B
212 221Right-handed alpha
Helix 18
AB9
B
231 241Right-handed alpha
Helix 19
AC1
B
253 257Right-handed 310
Helix 20
AC2
B
268 273Right-handed alpha
Helix 21
AC3
B
281 304Right-handed alpha
Helix 22
AC4
B
318 328Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8OV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
25 28anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
44 52anti-parallel
Strand 3
A
80 90anti-parallel
Strand 4
A
100 106anti-parallel
Strand 5
A
119 121anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
44 52anti-parallel
Strand 3
A
334 338anti-parallel
Strand 4
A
310 314parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
183 188parallel
Strand 3
A
159 163parallel
Strand 4
A
223 228parallel
Strand 5
A
242 250parallel
Strand 6
A
276 279parallel
Strand 7
B
276 279anti-parallel
Strand 8
B
242 250parallel
Strand 9
B
223 228parallel
Strand 10
B
159 162parallel
Strand 11
B
183 188parallel
Strand 12
B
204 207parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
32 33anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
25 28anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
44 52anti-parallel
Strand 3
B
80 90anti-parallel
Strand 4
B
100 106anti-parallel
Strand 5
B
119 121anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 113first strand
Strand 2
B
44 52anti-parallel
Strand 3
B
334 338anti-parallel
Strand 4
B
310 314parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il