Analysis of interatomic Contacts of Structural Units in PDB entry:
8OVO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OVO entry

There are 4 chains in PDB entry 8OVO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	LEU 412
A	VAL 416	LEU 519
B	GLY 4	LEU 412
B	VAL 416	LEU 519

There are 37 helices in PDB entry 8OVO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	14	Right-handed alpha
Helix 2	AA2	A	38	56	Right-handed alpha
Helix 3	AA3	A	71	78	Right-handed alpha
Helix 4	AA4	A	91	96	Right-handed alpha
Helix 5	AA5	A	121	126	Right-handed 310
Helix 6	AA6	A	136	149	Right-handed alpha
Helix 7	AA7	A	160	170	Right-handed alpha
Helix 8	AA8	A	180	189	Right-handed alpha
Helix 9	AA9	A	192	194	Right-handed 310
Helix 10	AB1	A	216	233	Right-handed alpha
Helix 11	AB2	A	234	245	Right-handed alpha
Helix 12	AB3	A	260	263	Right-handed 310
Helix 13	AB4	A	351	357	Right-handed 310
Helix 14	AB5	A	404	409	Right-handed 310
Helix 15	AB6	A	416	420	Right-handed 310
Helix 16	AB7	A	423	429	Right-handed 310
Helix 17	AB8	A	430	435	Right-handed alpha
Helix 18	AB9	A	504	513	Right-handed alpha
Helix 19	AC1	B	5	14	Right-handed alpha
Helix 20	AC2	B	38	56	Right-handed alpha
Helix 21	AC3	B	71	78	Right-handed alpha
Helix 22	AC4	B	93	97	Right-handed 310
Helix 23	AC5	B	121	126	Right-handed 310
Helix 24	AC6	B	136	150	Right-handed alpha
Helix 25	AC7	B	160	170	Right-handed alpha
Helix 26	AC8	B	180	189	Right-handed alpha
Helix 27	AC9	B	192	194	Right-handed 310
Helix 28	AD1	B	216	233	Right-handed alpha
Helix 29	AD2	B	234	245	Right-handed alpha
Helix 30	AD3	B	260	263	Right-handed 310
Helix 31	AD4	B	351	357	Right-handed 310
Helix 32	AD5	B	385	387	Right-handed 310
Helix 33	AD6	B	404	409	Right-handed 310
Helix 34	AD7	B	416	420	Right-handed 310
Helix 35	AD8	B	423	429	Right-handed 310
Helix 36	AD9	B	430	435	Right-handed alpha
Helix 37	AE1	B	504	513	Right-handed alpha

There are 8 sheets in PDB entry 8OVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	15	20	parallel
Strand 3	A	83	84	parallel
Strand 4	A	205	212	anti-parallel
Strand 5	A	99	114	anti-parallel
Strand 6	A	175	179	anti-parallel
Strand 7	A	129	133	parallel
Strand 8	A	154	158	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	90	first strand
Strand 2	A	205	212	anti-parallel
Strand 3	A	99	114	anti-parallel
Strand 4	A	196	199	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	28	30	anti-parallel
Strand 3	A	36	37	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	259	first strand
Strand 2	A	264	274	anti-parallel
Strand 3	A	280	291	anti-parallel
Strand 4	A	440	448	anti-parallel
Strand 5	A	453	463	anti-parallel
Strand 6	A	466	476	anti-parallel
Strand 7	A	360	370	parallel
Strand 8	A	373	384	anti-parallel
Strand 9	A	389	396	anti-parallel
Strand 10	A	321	331	anti-parallel
Strand 11	A	303	312	anti-parallel
Strand 12	A	252	259	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	15	20	parallel
Strand 3	B	83	84	parallel
Strand 4	B	205	212	anti-parallel
Strand 5	B	99	114	anti-parallel
Strand 6	B	175	179	anti-parallel
Strand 7	B	129	133	parallel
Strand 8	B	154	158	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	205	212	anti-parallel
Strand 3	B	99	114	anti-parallel
Strand 4	B	196	199	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	28	30	anti-parallel
Strand 3	B	36	37	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	259	first strand
Strand 2	B	264	274	anti-parallel
Strand 3	B	280	291	anti-parallel
Strand 4	B	440	448	anti-parallel
Strand 5	B	453	463	anti-parallel
Strand 6	B	466	476	anti-parallel
Strand 7	B	360	370	parallel
Strand 8	B	373	384	anti-parallel
Strand 9	B	389	396	anti-parallel
Strand 10	B	321	331	anti-parallel
Strand 11	B	303	312	anti-parallel
Strand 12	B	252	259	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OVO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OVO