Analysis of interatomic Contacts of Structural Units in PDB entry:
8OVP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OVP entry

There are 4 chains in PDB entry 8OVP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	LEU 412
A	VAL 416	LYS 512
B	GLY 1	LEU 412
B	VAL 416	LYS 512

There are 39 helices in PDB entry 8OVP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	14	Right-handed alpha
Helix 2	AA2	A	38	56	Right-handed alpha
Helix 3	AA3	A	71	78	Right-handed alpha
Helix 4	AA4	A	91	96	Right-handed alpha
Helix 5	AA5	A	121	126	Right-handed 310
Helix 6	AA6	A	136	150	Right-handed alpha
Helix 7	AA7	A	160	170	Right-handed alpha
Helix 8	AA8	A	180	189	Right-handed alpha
Helix 9	AA9	A	192	194	Right-handed 310
Helix 10	AB1	A	216	233	Right-handed alpha
Helix 11	AB2	A	234	245	Right-handed alpha
Helix 12	AB3	A	260	263	Right-handed 310
Helix 13	AB4	A	336	340	Right-handed 310
Helix 14	AB5	A	351	357	Right-handed 310
Helix 15	AB6	A	385	387	Right-handed 310
Helix 16	AB7	A	404	409	Right-handed 310
Helix 17	AB8	A	416	420	Right-handed 310
Helix 18	AB9	A	423	429	Right-handed 310
Helix 19	AC1	A	430	435	Right-handed alpha
Helix 20	AC2	A	504	511	Right-handed alpha
Helix 21	AC3	B	5	14	Right-handed alpha
Helix 22	AC4	B	38	55	Right-handed alpha
Helix 23	AC5	B	71	78	Right-handed alpha
Helix 24	AC6	B	91	96	Right-handed alpha
Helix 25	AC7	B	121	126	Right-handed 310
Helix 26	AC8	B	136	149	Right-handed alpha
Helix 27	AC9	B	160	170	Right-handed alpha
Helix 28	AD1	B	180	189	Right-handed alpha
Helix 29	AD2	B	192	194	Right-handed 310
Helix 30	AD3	B	216	233	Right-handed alpha
Helix 31	AD4	B	234	245	Right-handed alpha
Helix 32	AD5	B	260	263	Right-handed 310
Helix 33	AD6	B	350	355	Right-handed alpha
Helix 34	AD7	B	385	387	Right-handed 310
Helix 35	AD8	B	404	409	Right-handed 310
Helix 36	AD9	B	416	420	Right-handed 310
Helix 37	AE1	B	423	429	Right-handed 310
Helix 38	AE2	B	430	435	Right-handed alpha
Helix 39	AE3	B	504	511	Right-handed alpha

There are 9 sheets in PDB entry 8OVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	15	20	parallel
Strand 3	A	83	84	parallel
Strand 4	A	205	212	anti-parallel
Strand 5	A	99	114	anti-parallel
Strand 6	A	175	179	anti-parallel
Strand 7	A	129	133	parallel
Strand 8	A	154	158	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	66	first strand
Strand 2	A	15	20	parallel
Strand 3	A	83	84	parallel
Strand 4	A	205	212	anti-parallel
Strand 5	A	99	114	anti-parallel
Strand 6	A	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	28	30	anti-parallel
Strand 3	A	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	259	first strand
Strand 2	A	264	274	anti-parallel
Strand 3	A	280	291	anti-parallel
Strand 4	A	440	448	anti-parallel
Strand 5	A	453	463	anti-parallel
Strand 6	A	466	476	anti-parallel
Strand 7	A	360	370	parallel
Strand 8	A	373	384	anti-parallel
Strand 9	A	389	396	anti-parallel
Strand 10	A	321	331	anti-parallel
Strand 11	A	303	312	anti-parallel
Strand 12	A	252	259	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	66	first strand
Strand 2	B	15	20	parallel
Strand 3	B	83	84	parallel
Strand 4	B	211	212	anti-parallel
Strand 5	B	99	100	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	28	30	anti-parallel
Strand 3	B	36	37	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	158	first strand
Strand 2	B	129	133	parallel
Strand 3	B	175	179	parallel
Strand 4	B	105	114	anti-parallel
Strand 5	B	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	158	first strand
Strand 2	B	129	133	parallel
Strand 3	B	175	179	parallel
Strand 4	B	105	114	anti-parallel
Strand 5	B	205	208	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	259	first strand
Strand 2	B	264	274	anti-parallel
Strand 3	B	280	291	anti-parallel
Strand 4	B	440	448	anti-parallel
Strand 5	B	453	463	anti-parallel
Strand 6	B	466	476	anti-parallel
Strand 7	B	360	370	parallel
Strand 8	B	373	384	anti-parallel
Strand 9	B	389	396	anti-parallel
Strand 10	B	321	331	anti-parallel
Strand 11	B	303	312	anti-parallel
Strand 12	B	252	259	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OVP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OVP