Analysis of interatomic Contacts of Structural Units in PDB entry:
8OW5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8OW5 entry

There are 4 chains in PDB entry 8OW5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 185	GLN 412
B	HIS 185	GLN 412
C	HIS 185	GLN 412
D	HIS 184	GLN 412

There are 24 helices in PDB entry 8OW5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	215	228	Right-handed alpha
Helix 2	AA2	A	255	267	Right-handed alpha
Helix 3	AA3	A	268	270	Right-handed 310
Helix 4	AA4	A	309	320	Right-handed alpha
Helix 5	AA5	A	342	355	Right-handed alpha
Helix 6	AA6	A	393	412	Right-handed alpha
Helix 7	AA7	B	215	228	Right-handed alpha
Helix 8	AA8	B	255	267	Right-handed alpha
Helix 9	AA9	B	268	270	Right-handed 310
Helix 10	AB1	B	309	320	Right-handed alpha
Helix 11	AB2	B	342	355	Right-handed alpha
Helix 12	AB3	B	393	412	Right-handed alpha
Helix 13	AB4	C	215	228	Right-handed alpha
Helix 14	AB5	C	255	267	Right-handed alpha
Helix 15	AB6	C	268	270	Right-handed 310
Helix 16	AB7	C	309	320	Right-handed alpha
Helix 17	AB8	C	342	355	Right-handed alpha
Helix 18	AB9	C	393	412	Right-handed alpha
Helix 19	AC1	D	215	228	Right-handed alpha
Helix 20	AC2	D	255	267	Right-handed alpha
Helix 21	AC3	D	268	270	Right-handed 310
Helix 22	AC4	D	309	320	Right-handed alpha
Helix 23	AC5	D	347	355	Right-handed alpha
Helix 24	AC6	D	393	412	Right-handed alpha

There are 11 sheets in PDB entry 8OW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	252	first strand
Strand 2	A	230	236	parallel
Strand 3	A	190	198	parallel
Strand 4	A	272	278	parallel
Strand 5	A	328	333	parallel
Strand 6	A	358	361	parallel
Strand 7	A	378	381	anti-parallel
Strand 8	A	386	388	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	207	210	anti-parallel
Strand 3	B	208	211	anti-parallel
Strand 4	B	200	202	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	304	306	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	C	286	288	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	B	302	306	anti-parallel
Strand 3	B	282	284	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	253	first strand
Strand 2	B	230	237	parallel
Strand 3	B	190	198	parallel
Strand 4	B	272	278	parallel
Strand 5	B	328	333	parallel
Strand 6	B	358	361	parallel
Strand 7	B	378	381	anti-parallel
Strand 8	B	386	388	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	252	first strand
Strand 2	C	231	236	parallel
Strand 3	C	191	196	parallel
Strand 4	C	272	275	parallel
Strand 5	C	328	334	parallel
Strand 6	C	358	362	parallel
Strand 7	C	378	381	anti-parallel
Strand 8	C	386	388	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	211	first strand
Strand 2	D	207	211	anti-parallel
Strand 3	D	200	202	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	302	306	anti-parallel
Strand 3	D	301	302	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	252	first strand
Strand 2	D	231	236	parallel
Strand 3	D	191	196	parallel
Strand 4	D	272	275	parallel
Strand 5	D	328	333	parallel
Strand 6	D	358	361	parallel
Strand 7	D	378	381	anti-parallel
Strand 8	D	386	388	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	304	306	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8OW5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8OW5