Analysis of interatomic Contacts of Structural Units in PDB entry:
8OX4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OX4 entry

There are 2 chains in PDB entry 8OX4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 106LYS 1183
B
 LYS 24ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8OX4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 118Right-handed alpha
Helix 2
AA2
A
118 133Right-handed alpha
Helix 3
AA3
A
141 174Right-handed alpha
Helix 4
AA4
A
331 366Right-handed alpha
Helix 5
AA5
A
380 392Right-handed alpha
Helix 6
AA6
A
394 400Right-handed 310
Helix 7
AA7
A
401 402Right-handed 310
Helix 8
AA8
A
403 422Right-handed alpha
Helix 9
AA9
A
442 448Right-handed 310
Helix 10
AB1
A
509 518Right-handed alpha
Helix 11
AB2
A
521 532Right-handed alpha
Helix 12
AB3
A
552 564Right-handed alpha
Helix 13
AB4
A
621 627Right-handed alpha
Helix 14
AB5
A
635 648Right-handed alpha
Helix 15
AB6
A
662 677Right-handed alpha
Helix 16
AB7
A
679 681Right-handed 310
Helix 17
AB8
A
682 695Right-handed alpha
Helix 18
AB9
A
713 724Right-handed alpha
Helix 19
AC1
A
735 746Right-handed alpha
Helix 20
AC2
A
757 773Right-handed alpha
Helix 21
AC3
A
803 811Right-handed alpha
Helix 22
AC4
A
837 858Right-handed alpha
Helix 23
AC5
A
869 885Right-handed alpha
Helix 24
AC6
A
894 896Right-handed 310
Helix 25
AC7
A
897 904Right-handed alpha
Helix 26
AC8
A
928 930Right-handed 310
Helix 27
AC9
A
931 938Right-handed alpha
Helix 28
AD1
A
938 960Right-handed alpha
Helix 29
AD2
A
962 969Right-handed alpha
Helix 30
AD3
A
970 973Right-handed 310
Helix 31
AD4
A
981 991Right-handed alpha
Helix 32
AD5
A
994 1004Right-handed alpha
Helix 33
AD6
A
1008 1014Right-handed alpha
Helix 34
AD7
A
1015 1018Right-handed 310
Helix 35
AD8
A
1019 1024Right-handed alpha
Helix 36
AD9
A
1032 1057Right-handed alpha
Helix 37
AE1
A
1069 1092Right-handed alpha
Helix 38
AE2
A
1098 1118Right-handed alpha
Helix 39
AE3
A
1119 1126Right-handed alpha
Helix 40
AE4
A
1135 1140Right-handed alpha
Helix 41
AE5
A
1142 1171Right-handed alpha
Helix 42
AE6
A
1173 1181Right-handed alpha
Helix 43
AE7
B
46 75Right-handed alpha
Helix 44
AE8
B
91 96Right-handed 310
Helix 45
AE9
B
131 136Right-handed alpha
Helix 46
AF1
B
139 145Right-handed alpha
Helix 47
AF2
B
146 151Right-handed alpha
Helix 48
AF3
B
154 161Right-handed 310
Helix 49
AF4
B
171 177Right-handed alpha
Helix 50
AF5
B
206 212Right-handed alpha
Helix 51
AF6
B
222 227Right-handed alpha
Helix 52
AF7
B
239 243Right-handed 310
Helix 53
AF8
B
254 262Right-handed alpha
Helix 54
AF9
B
301 305Right-handed 310
Helix 55
AG1
B
322 351Right-handed alpha
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There are 9 sheets in PDB entry 8OX4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
A
432 433anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
801 802first strand
Strand 2
A
863 866parallel
Strand 3
A
727 731parallel
Strand 4
A
450 453parallel
Strand 5
A
888 892parallel
Strand 6
A
906 909parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
465 471anti-parallel
Strand 3
A
699 707anti-parallel
Strand 4
A
655 660anti-parallel
Strand 5
A
614 620anti-parallel
Strand 6
A
602 608anti-parallel
Strand 7
A
589 594anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
465 471anti-parallel
Strand 3
A
699 707anti-parallel
Strand 4
A
651 652anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 540first strand
Strand 2
A
547 549anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 572first strand
Strand 2
A
577 581anti-parallel
Strand 3
A
584 585anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1096first strand
Strand 2
B
40 41anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
307 314anti-parallel
Strand 3
B
118 125anti-parallel
Strand 4
B
269 276anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 109first strand
Strand 2
B
290 296anti-parallel
Strand 3
B
182 188anti-parallel
Strand 4
B
194 196anti-parallel
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