Analysis of interatomic Contacts of Structural Units in PDB entry:
8OX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OX5 entry

There are 2 chains in PDB entry 8OX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 106LYS 1183
B
 LYS 24ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8OX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 117Right-handed alpha
Helix 2
AA2
A
118 131Right-handed alpha
Helix 3
AA3
A
133 137Right-handed 310
Helix 4
AA4
A
141 172Right-handed alpha
Helix 5
AA5
A
331 355Right-handed alpha
Helix 6
AA6
A
355 363Right-handed alpha
Helix 7
AA7
A
364 370Right-handed alpha
Helix 8
AA8
A
380 396Right-handed alpha
Helix 9
AA9
A
397 400Right-handed 310
Helix 10
AB1
A
403 422Right-handed alpha
Helix 11
AB2
A
423 426Right-handed 310
Helix 12
AB3
A
441 446Right-handed alpha
Helix 13
AB4
A
509 518Right-handed alpha
Helix 14
AB5
A
521 534Right-handed alpha
Helix 15
AB6
A
552 565Right-handed alpha
Helix 16
AB7
A
621 627Right-handed alpha
Helix 17
AB8
A
636 648Right-handed alpha
Helix 18
AB9
A
662 678Right-handed alpha
Helix 19
AC1
A
685 696Right-handed alpha
Helix 20
AC2
A
713 724Right-handed alpha
Helix 21
AC3
A
737 746Right-handed alpha
Helix 22
AC4
A
758 773Right-handed alpha
Helix 23
AC5
A
803 811Right-handed alpha
Helix 24
AC6
A
838 859Right-handed alpha
Helix 25
AC7
A
869 884Right-handed alpha
Helix 26
AC8
A
894 896Right-handed 310
Helix 27
AC9
A
897 904Right-handed alpha
Helix 28
AD1
A
916 921Right-handed alpha
Helix 29
AD2
A
928 930Right-handed 310
Helix 30
AD3
A
931 937Right-handed alpha
Helix 31
AD4
A
938 971Right-handed alpha
Helix 32
AD5
A
985 991Right-handed alpha
Helix 33
AD6
A
994 1004Right-handed alpha
Helix 34
AD7
A
1008 1015Right-handed alpha
Helix 35
AD8
A
1016 1018Right-handed 310
Helix 36
AD9
A
1019 1025Right-handed alpha
Helix 37
AE1
A
1030 1057Right-handed alpha
Helix 38
AE2
A
1068 1090Right-handed alpha
Helix 39
AE3
A
1097 1119Right-handed alpha
Helix 40
AE4
A
1119 1126Right-handed alpha
Helix 41
AE5
A
1134 1140Right-handed alpha
Helix 42
AE6
A
1142 1171Right-handed alpha
Helix 43
AE7
A
1173 1180Right-handed alpha
Helix 44
AE8
B
31 36Right-handed alpha
Helix 45
AE9
B
46 59Right-handed alpha
Helix 46
AF1
B
60 74Right-handed alpha
Helix 47
AF2
B
91 96Right-handed 310
Helix 48
AF3
B
131 137Right-handed alpha
Helix 49
AF4
B
139 144Right-handed alpha
Helix 50
AF5
B
146 152Right-handed alpha
Helix 51
AF6
B
154 161Right-handed 310
Helix 52
AF7
B
172 177Right-handed alpha
Helix 53
AF8
B
206 212Right-handed alpha
Helix 54
AF9
B
222 227Right-handed alpha
Helix 55
AG1
B
239 243Right-handed 310
Helix 56
AG2
B
250 253Right-handed 310
Helix 57
AG3
B
254 262Right-handed alpha
Helix 58
AG4
B
322 350Right-handed alpha
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There are 8 sheets in PDB entry 8OX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
924 925anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 451first strand
Strand 2
A
727 728parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 476first strand
Strand 2
A
465 471anti-parallel
Strand 3
A
699 707anti-parallel
Strand 4
A
655 660anti-parallel
Strand 5
A
614 620anti-parallel
Strand 6
A
602 608anti-parallel
Strand 7
A
588 594anti-parallel
Strand 8
A
576 577anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 732first strand
Strand 2
A
864 866parallel
Strand 3
A
800 802parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
889 892first strand
Strand 2
A
906 909parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1096first strand
Strand 2
B
40 41anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
307 314anti-parallel
Strand 3
B
118 125anti-parallel
Strand 4
B
269 276anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 110first strand
Strand 2
B
289 297anti-parallel
Strand 3
B
183 188anti-parallel
Strand 4
B
194 196anti-parallel
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