Analysis of interatomic Contacts of Structural Units in PDB entry:
8OX6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8OX6 entry

There are 2 chains in PDB entry 8OX6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 100LYS 1183
B
 LYS 24ARG 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8OX6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 116Right-handed alpha
Helix 2
AA2
A
118 131Right-handed alpha
Helix 3
AA3
A
141 174Right-handed alpha
Helix 4
AA4
A
331 366Right-handed alpha
Helix 5
AA5
A
370 374Right-handed 310
Helix 6
AA6
A
380 396Right-handed alpha
Helix 7
AA7
A
397 400Right-handed 310
Helix 8
AA8
A
403 422Right-handed alpha
Helix 9
AA9
A
442 447Right-handed 310
Helix 10
AB1
A
713 724Right-handed alpha
Helix 11
AB2
A
734 744Right-handed alpha
Helix 12
AB3
A
744 749Right-handed alpha
Helix 13
AB4
A
869 885Right-handed alpha
Helix 14
AB5
A
894 896Right-handed 310
Helix 15
AB6
A
897 904Right-handed alpha
Helix 16
AB7
A
928 930Right-handed 310
Helix 17
AB8
A
931 937Right-handed alpha
Helix 18
AB9
A
938 963Right-handed alpha
Helix 19
AC1
A
963 970Right-handed alpha
Helix 20
AC2
A
981 989Right-handed alpha
Helix 21
AC3
A
994 1004Right-handed alpha
Helix 22
AC4
A
1008 1015Right-handed alpha
Helix 23
AC5
A
1016 1018Right-handed 310
Helix 24
AC6
A
1019 1024Right-handed alpha
Helix 25
AC7
A
1030 1057Right-handed alpha
Helix 26
AC8
A
1068 1092Right-handed alpha
Helix 27
AC9
A
1097 1119Right-handed alpha
Helix 28
AD1
A
1119 1126Right-handed alpha
Helix 29
AD2
A
1134 1140Right-handed alpha
Helix 30
AD3
A
1142 1156Right-handed alpha
Helix 31
AD4
A
1157 1171Right-handed alpha
Helix 32
AD5
A
1173 1181Right-handed alpha
Helix 33
AD6
B
49 75Right-handed alpha
Helix 34
AD7
B
91 96Right-handed 310
Helix 35
AD8
B
131 137Right-handed alpha
Helix 36
AD9
B
139 144Right-handed alpha
Helix 37
AE1
B
146 152Right-handed alpha
Helix 38
AE2
B
154 161Right-handed 310
Helix 39
AE3
B
172 177Right-handed alpha
Helix 40
AE4
B
206 212Right-handed alpha
Helix 41
AE5
B
222 227Right-handed 310
Helix 42
AE6
B
250 253Right-handed 310
Helix 43
AE7
B
254 262Right-handed alpha
Helix 44
AE8
B
322 350Right-handed alpha
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There are 6 sheets in PDB entry 8OX6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
426 427first strand
Strand 2
A
432 433anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 730first strand
Strand 2
A
450 453parallel
Strand 3
A
888 892parallel
Strand 4
A
906 909parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1095 1096first strand
Strand 2
B
40 41anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
307 314anti-parallel
Strand 3
B
118 125anti-parallel
Strand 4
B
269 276anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
289 297anti-parallel
Strand 3
B
106 110anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
B
289 297anti-parallel
Strand 3
B
182 188anti-parallel
Strand 4
B
194 196anti-parallel
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